Variant report

Variant	rs9397686
Chromosome Location	chr6:150467921-150467922
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150460907..150462974-chr6:150465892..150468393,3	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1889551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9371787	0.82[CHB][hapmap]
rs9383690	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9384196	0.88[CHB][hapmap]
rs9397708	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1026690	chr6:150419115-150485583	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150465600-150471600	Weak transcription	Psoas Muscle	Psoas
2	chr6:150465600-150471800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:150465800-150468800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:150467000-150468000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:150467000-150468400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:150467000-150470200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:150467000-150470200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:150467200-150468000	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr6:150467200-150468000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr6:150467200-150469600	Enhancers	HMEC	breast
11	chr6:150467400-150468200	Enhancers	Placenta	Placenta
12	chr6:150467400-150469000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:150467600-150468000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:150467600-150468000	Bivalent Enhancer	Fetal Brain Male	brain
15	chr6:150467600-150468200	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:150467600-150468800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:150467800-150468000	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
18	chr6:150467800-150468000	Enhancers	K562	blood
19	chr6:150467800-150468200	Enhancers	Right Ventricle	heart
20	chr6:150467800-150468600	Enhancers	Left Ventricle	heart
21	chr6:150467800-150468800	Enhancers	Fetal Heart	heart
22	chr6:150467800-150469400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr6:150467800-150472600	Enhancers	NHEK	skin
24	chr6:150467800-150473400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:150467800-150473400	Weak transcription	Right Atrium	heart

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