Variant report

Variant	rs1889900
Chromosome Location	chr9:26789975-26789976
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10511777	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10738759	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10967520	0.88[EUR][1000 genomes]
rs10967540	0.82[CEU][hapmap]
rs1336334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2060410	0.92[ASN][1000 genomes]
rs2225811	0.82[AMR][1000 genomes]
rs2383713	0.82[ASN][1000 genomes]
rs2383715	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4978105	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4978106	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7027138	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7041493	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7853898	0.92[ASN][1000 genomes]
rs892572	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv613942	chr9:26722736-26789975	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv466333	chr9:26728455-26789975	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv613943	chr9:26728455-26789975	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1033113	chr9:26737203-26793584	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26788200-26790400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr9:26788400-26790800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:26788600-26790000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr9:26788800-26791000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:26789000-26790000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr9:26789000-26796800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:26789400-26790000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr9:26789400-26790000	Enhancers	Ovary	ovary
9	chr9:26789600-26790400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr9:26789600-26791400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:26789800-26790000	Enhancers	HSMMtube	muscle
12	chr9:26789800-26790200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:26789800-26790600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr9:26789800-26790600	Enhancers	HMEC	breast
15	chr9:26789800-26790800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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