Variant report

Variant	rs7027138
Chromosome Location	chr9:26755120-26755121
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:26751819..26753348-chr9:26754776..26757194,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10511777	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10738759	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10967520	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1336334	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1889900	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2060410	1.00[ASN][1000 genomes]
rs2383713	0.92[ASN][1000 genomes]
rs2383715	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4978105	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4978106	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7041493	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7853898	1.00[ASN][1000 genomes]
rs892572	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995049	chr9:26162115-26760535	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892858	chr9:26609613-26783463	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv892860	chr9:26704385-26789940	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv892861	chr9:26707333-26789940	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv466332	chr9:26709294-26783463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv613941	chr9:26709294-26783463	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv613942	chr9:26722736-26789975	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv466333	chr9:26728455-26789975	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv613943	chr9:26728455-26789975	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv1033113	chr9:26737203-26793584	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv1032172	chr9:26742409-26789626	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26753400-26755600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr9:26753600-26755600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr9:26753800-26755200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:26753800-26755800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr9:26753800-26756400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr9:26753800-26757600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr9:26754000-26755400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:26754000-26755400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr9:26754000-26755600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr9:26754000-26757200	Enhancers	Liver	Liver
11	chr9:26754200-26755600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr9:26754200-26755600	Enhancers	Ovary	ovary
13	chr9:26754200-26756200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr9:26754200-26756400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:26754400-26755400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr9:26754400-26755600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:26754400-26756400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:26754600-26755200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr9:26754600-26755400	Enhancers	Brain Cingulate Gyrus	brain
20	chr9:26754600-26755400	Enhancers	Brain Germinal Matrix	brain
21	chr9:26754600-26755600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:26754600-26755800	Enhancers	H9 Cell Line	embryonic stem cell
23	chr9:26754800-26755800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr9:26754800-26756400	Enhancers	Adipose Nuclei	Adipose
25	chr9:26755000-26756200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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