Variant report

Variant	rs1890854
Chromosome Location	chr13:69387686-69387687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:69385279..69388108-chr13:69393931..69396561,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11616472	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11617638	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1561395	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1659025	1.00[ASN][1000 genomes]
rs17084220	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17571914	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1770329	1.00[ASN][1000 genomes]
rs28652840	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55994724	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56353826	1.00[ASN][1000 genomes]
rs58016055	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59241487	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs600292	1.00[ASN][1000 genomes]
rs61584421	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61949912	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61949913	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61949950	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61949952	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs620340	1.00[ASN][1000 genomes]
rs630878	1.00[ASN][1000 genomes]
rs632041	1.00[ASN][1000 genomes]
rs661827	1.00[ASN][1000 genomes]
rs669282	1.00[ASN][1000 genomes]
rs685541	1.00[ASN][1000 genomes]
rs7339058	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049303	chr13:69238676-69923558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1038918	chr13:69251052-69919763	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541829	chr13:69251052-69919763	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2757540	chr13:69355636-69392579	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2759945	chr13:69355636-69392579	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv471145	chr13:69375632-69388776	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv976245	chr13:69383145-69387869	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3518742	chr13:69385694-69393561	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3518753	chr13:69385694-69393561	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv826691	chr13:69385796-69392970	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv818974	chr13:69387686-69391512	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69387000-69387800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr13:69387000-69388200	Enhancers	Fetal Heart	heart
3	chr13:69387200-69387800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:69387400-69387800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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