Variant report
Variant | rs630878 |
---|---|
Chromosome Location | chr13:69435906-69435907 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
(count:2 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-KLHL1-1 | chr13:69435419-69438548 | XLOC_010651 |
2 | lnc-KLHL1-1 | chr13:69435417-69438548 | NONHSAT034238 |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11616472 | 1.00[ASN][1000 genomes] |
rs11617638 | 1.00[ASN][1000 genomes] |
rs1561395 | 1.00[ASN][1000 genomes] |
rs1659025 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17084220 | 1.00[ASN][1000 genomes] |
rs17571914 | 1.00[ASN][1000 genomes] |
rs1770329 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1890854 | 1.00[ASN][1000 genomes] |
rs28652840 | 1.00[ASN][1000 genomes] |
rs55994724 | 1.00[ASN][1000 genomes] |
rs56353826 | 1.00[ASN][1000 genomes] |
rs58016055 | 1.00[ASN][1000 genomes] |
rs59241487 | 1.00[ASN][1000 genomes] |
rs600292 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61584421 | 1.00[ASN][1000 genomes] |
rs61949912 | 1.00[ASN][1000 genomes] |
rs61949950 | 1.00[ASN][1000 genomes] |
rs61949952 | 1.00[ASN][1000 genomes] |
rs620340 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs632041 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs635923 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs661827 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs669282 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs685541 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7339058 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1049303 | chr13:69238676-69923558 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
2 | nsv1038918 | chr13:69251052-69919763 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
3 | nsv541829 | chr13:69251052-69919763 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
4 | nsv1046227 | chr13:69402973-69543492 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
5 | nsv562198 | chr13:69424751-69456954 | Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:69420600-69448400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |