Variant report
| Variant | rs7339058 |
|---|---|
| Chromosome Location | chr13:69404219-69404220 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11616472 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11617638 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1561395 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1659025 | 1.00[ASN][1000 genomes] |
| rs17084220 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17571914 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1770329 | 1.00[ASN][1000 genomes] |
| rs1890854 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28652840 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55994724 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56353826 | 1.00[ASN][1000 genomes] |
| rs58016055 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59241487 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs600292 | 1.00[ASN][1000 genomes] |
| rs61584421 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61949912 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61949913 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs61949950 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61949952 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs620340 | 1.00[ASN][1000 genomes] |
| rs630878 | 1.00[ASN][1000 genomes] |
| rs632041 | 1.00[ASN][1000 genomes] |
| rs661827 | 1.00[ASN][1000 genomes] |
| rs669282 | 1.00[ASN][1000 genomes] |
| rs685541 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1049303 | chr13:69238676-69923558 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv1038918 | chr13:69251052-69919763 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv541829 | chr13:69251052-69919763 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv1046227 | chr13:69402973-69543492 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:69404200-69406000 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
