Variant report

Variant	rs1891524
Chromosome Location	chr6:71891166-71891167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr6:71890948-71891810	IMR90	lung:	n/a	n/a
2	TEAD4	chr6:71891124-71891620	ECC-1	luminal epithelium:	n/a	n/a
3	SP1	chr6:71891114-71891665	H1-hESC	embryonic stem cell:	n/a	n/a
4	CEBPB	chr6:71891162-71891620	Hela-S3	cervix:	n/a	n/a
5	TEAD4	chr6:71891159-71891673	H1-hESC	embryonic stem cell:	n/a	n/a
6	TEAD4	chr6:71891153-71891666	H1-hESC	embryonic stem cell:	n/a	n/a
7	FOSL2	chr6:71891163-71891687	SK-N-SH	brain:	n/a	n/a
8	MAZ	chr6:71890972-71891907	IMR90	lung:	n/a	n/a
9	TEAD4	chr6:71891120-71891685	ECC-1	luminal epithelium:	n/a	n/a
10	SP1	chr6:71891081-71891615	A549	lung:	n/a	n/a
11	MAFK	chr6:71890937-71891647	H1-hESC	embryonic stem cell:	n/a	n/a
12	RAD21	chr6:71891153-71891577	Hela-S3	cervix:	n/a	n/a
13	E2F4	chr6:71891117-71891556	MCF10A-Er-Src	breast:	n/a	n/a
14	SP1	chr6:71891148-71891666	H1-hESC	embryonic stem cell:	n/a	n/a
15	STAT3	chr6:71891163-71891551	MCF10A-Er-Src	breast:	n/a	n/a
16	JUND	chr6:71891140-71891602	H1-hESC	embryonic stem cell:	n/a	n/a
17	SP1	chr6:71891160-71891640	A549	lung:	n/a	n/a
18	POLR2A	chr6:71891126-71891737	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
RNU6-411P	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1207167	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1739803	1.00[AMR][1000 genomes]
rs1739804	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1819738	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1935804	1.00[AMR][1000 genomes]
rs1935805	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2881839	1.00[AMR][1000 genomes]
rs58530565	1.00[AMR][1000 genomes]
rs73500913	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73501153	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73501157	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7743246	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455331	1.00[AMR][1000 genomes]
rs9455333	1.00[AMR][1000 genomes]
rs9455340	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527265	chr6:71867477-71902656	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv886149	chr6:71875777-71936292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv886150	chr6:71888871-71936292	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1016393	chr6:71890237-71941786	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv526921	chr6:71890237-71950242	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71887200-71891200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:71887400-71892000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:71889200-71892200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:71889400-71892200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:71889600-71891200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:71890200-71892000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:71890400-71891200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:71890600-71891200	Enhancers	HSMMtube	muscle
9	chr6:71890600-71891800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:71890600-71892000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:71890600-71892000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr6:71890600-71892200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr6:71890600-71892600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:71890800-71891600	Enhancers	H9 Cell Line	embryonic stem cell
15	chr6:71890800-71891600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:71890800-71891600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:71890800-71891800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr6:71890800-71891800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:71890800-71891800	Enhancers	Muscle Satellite Cultured Cells	--
20	chr6:71890800-71891800	Enhancers	A549	lung
21	chr6:71890800-71891800	Enhancers	NHEK	skin
22	chr6:71890800-71891800	Enhancers	Osteobl	bone
23	chr6:71890800-71892000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr6:71890800-71892000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:71890800-71892000	Enhancers	Fetal Heart	heart
26	chr6:71890800-71892000	Enhancers	Hela-S3	cervix
27	chr6:71890800-71892000	Enhancers	HSMM	muscle
28	chr6:71890800-71892000	Enhancers	NHDF-Ad	bronchial
29	chr6:71890800-71892200	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr6:71890800-71892200	Enhancers	HMEC	breast
31	chr6:71891000-71891600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:71891000-71891800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:71891000-71891800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr6:71891000-71891800	Enhancers	NH-A	brain
35	chr6:71891000-71891800	Enhancers	NHLF	lung

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