Variant report

Variant	rs2881839
Chromosome Location	chr6:71906821-71906822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1207167	1.00[AMR][1000 genomes]
rs1739803	1.00[AMR][1000 genomes]
rs1739804	1.00[AMR][1000 genomes]
rs1819738	1.00[AMR][1000 genomes]
rs1891524	1.00[AMR][1000 genomes]
rs1935804	1.00[AMR][1000 genomes]
rs1935805	1.00[AMR][1000 genomes]
rs58530565	1.00[AMR][1000 genomes]
rs73500913	1.00[AMR][1000 genomes]
rs73501153	1.00[AMR][1000 genomes]
rs73501157	1.00[AMR][1000 genomes]
rs7743246	1.00[AMR][1000 genomes]
rs9455331	1.00[AMR][1000 genomes]
rs9455333	1.00[AMR][1000 genomes]
rs9455340	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886149	chr6:71875777-71936292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886150	chr6:71888871-71936292	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1016393	chr6:71890237-71941786	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv526921	chr6:71890237-71950242	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71891800-71907200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:71898000-71907400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:71903200-71907000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:71904200-71907000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:71904200-71907200	Enhancers	Osteobl	bone
6	chr6:71904200-71907400	Enhancers	HSMM	muscle
7	chr6:71904400-71907400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:71905200-71907000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:71905200-71907000	Weak transcription	Hela-S3	cervix
10	chr6:71905200-71907400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:71905400-71907400	Weak transcription	A549	lung
12	chr6:71905400-71908000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr6:71905800-71907000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:71906000-71907400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:71906600-71907200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr6:71906600-71908000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:71906600-71908200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:71906800-71907000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:71906800-71907200	Enhancers	NH-A	brain
20	chr6:71906800-71907600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:71906800-71908000	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr6:71906800-71908000	Flanking Active TSS	HSMMtube	muscle

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