Variant report

Variant	rs1891688
Chromosome Location	chr20:23318714-23318715
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23317010..23320085-chr20:23328448..23332223,4	MCF-7	breast:
2	chr20:23318098..23319011-chr20:23338166..23338957,4	MCF-7	breast:
3	chr20:23318446..23319028-chr20:23341404..23342333,2	MCF-7	breast:
4	chr20:22668961..22671832-chr20:23317292..23319487,3	MCF-7	breast:
5	chr20:23311621..23313833-chr20:23315735..23318823,3	MCF-7	breast:
6	chr20:23312686..23317926-chr20:23318628..23321292,6	K562	blood:
7	chr20:23318135..23318935-chr20:23338340..23338940,2	MCF-7	breast:
8	chr20:23318136..23319028-chr20:23341404..23342333,4	MCF-7	breast:
9	chr20:23315045..23317329-chr20:23318645..23320307,2	MCF-7	breast:
10	chr20:23318098..23319058-chr20:23338126..23339004,15	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1112818	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1112819	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1984279	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2000262	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3949266	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4815194	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6048731	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6048740	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6048742	0.94[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6132597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1891688	NAPB	cis	Artery Tibial	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23315600-23321000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr20:23316400-23320600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr20:23317200-23321600	Weak transcription	GM12878-XiMat	blood
4	chr20:23317800-23318800	Enhancers	Brain Germinal Matrix	brain
5	chr20:23317800-23319400	Enhancers	HepG2	liver
6	chr20:23318200-23318800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr20:23318200-23320400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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