Variant report

Variant	rs6048742
Chromosome Location	chr20:23327584-23327585
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1016628	0.89[YRI][hapmap]
rs1112818	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1112819	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1419005	0.83[CEU][hapmap]
rs1891688	0.94[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1984279	0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2000262	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2243448	1.00[YRI][hapmap]
rs3949266	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4815194	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6048731	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6048740	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6048779	0.90[YRI][hapmap]
rs6076057	0.83[CEU][hapmap]
rs6076059	0.83[CEU][hapmap]
rs6083084	0.83[CEU][hapmap]
rs6083085	0.83[CEU][hapmap]
rs6132597	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6132611	0.81[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6048742	NAPB	cis	Artery Tibial	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23321800-23329400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr20:23325200-23328000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr20:23325600-23329600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr20:23326000-23329000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr20:23326000-23329800	Weak transcription	Fetal Heart	heart
6	chr20:23326200-23329400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr20:23326200-23330000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr20:23327000-23330400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr20:23327000-23330800	Weak transcription	Spleen	Spleen
10	chr20:23327200-23330000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr20:23327400-23327600	Weak transcription	Fetal Kidney	kidney
12	chr20:23327400-23330000	Weak transcription	HSMM	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links