Variant report

No.	Distal block	Cell Line	Cell type
1	chr20:23311621..23313833-chr20:23315735..23318823,3	MCF-7	breast:
2	chr20:23311600..23313681-chr20:23341000..23343675,2	K562	blood:
3	chr20:23312686..23317926-chr20:23318628..23321292,6	K562	blood:
4	chr20:23313103..23316389-chr20:23330465..23332586,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1112818	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1112819	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12625164	0.90[LWK][hapmap]
rs1419008	0.90[LWK][hapmap]
rs1891688	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2000262	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2295238	0.88[LWK][hapmap]
rs3736755	0.90[LWK][hapmap]
rs3746733	0.90[LWK][hapmap]
rs3746737	0.90[LWK][hapmap]
rs3949266	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4815194	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6048731	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6048740	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6048742	0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6132597	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6132600	0.90[LWK][hapmap]
rs6137907	0.90[LWK][hapmap]
rs6137915	0.90[LWK][hapmap]
rs6137938	0.81[LWK][hapmap]
rs6137939	0.90[LWK][hapmap]
rs6137945	0.90[LWK][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1984279	GINS1	cis	cerebellum	SCAN
rs1984279	NAPB	cis	Artery Tibial	GTEx
rs1984279	MFSD6	trans	cerebellum	SCAN
rs1984279	NXT1	cis	lymphoblastoid	seeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23307800-23314800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr20:23311800-23315000	Enhancers	K562	blood
3	chr20:23312200-23313200	Enhancers	HUVEC	blood vessel
4	chr20:23312400-23313400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr20:23312400-23313400	Enhancers	GM12878-XiMat	blood
6	chr20:23312400-23317600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr20:23312600-23313400	Enhancers	Primary B cells from peripheral blood	blood
8	chr20:23312600-23316000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr20:23312800-23313200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr20:23313000-23313400	Enhancers	NHEK	skin

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