Variant report

Variant	rs1897492
Chromosome Location	chr3:150426194-150426195
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11713173	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12630268	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1897488	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1897490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1897493	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2116688	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2116689	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2869474	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2904115	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4234312	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4679786	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4679799	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4680240	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6795266	0.83[ASN][1000 genomes]
rs7427065	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7631055	0.90[EUR][1000 genomes]
rs7652598	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9682304	0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9823709	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9832682	0.90[EUR][1000 genomes]
rs9841228	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9859732	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9876907	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150422000-150430400	Weak transcription	Spleen	Spleen
2	chr3:150422200-150428000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr3:150422200-150428200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:150422200-150429800	Weak transcription	Pancreas	Pancrea
5	chr3:150422200-150439400	Weak transcription	Ovary	ovary
6	chr3:150422200-150443200	Weak transcription	Lung	lung
7	chr3:150422400-150426200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr3:150422400-150427000	Weak transcription	Fetal Intestine Large	intestine
9	chr3:150422400-150427200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr3:150422400-150428200	Weak transcription	Brain Anterior Caudate	brain
11	chr3:150422400-150428600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:150422400-150429800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr3:150422400-150430000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:150422400-150434800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr3:150422400-150443000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr3:150422600-150426800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr3:150422600-150427600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:150422600-150427600	Weak transcription	Fetal Stomach	stomach
19	chr3:150422600-150427800	Weak transcription	Left Ventricle	heart
20	chr3:150422600-150428000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:150422600-150428200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr3:150422600-150428200	Weak transcription	Aorta	Aorta
23	chr3:150422600-150428200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr3:150422600-150428200	Weak transcription	Osteobl	bone
25	chr3:150422600-150428600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr3:150422600-150429800	Weak transcription	Placenta	Placenta
27	chr3:150422600-150429800	Weak transcription	Thymus	Thymus
28	chr3:150422600-150431000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr3:150422600-150439200	Weak transcription	Primary B cells from peripheral blood	blood
30	chr3:150422600-150439200	Weak transcription	Fetal Intestine Small	intestine
31	chr3:150422600-150439400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr3:150422600-150439400	Weak transcription	Adipose Nuclei	Adipose
33	chr3:150422600-150441800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr3:150423200-150428200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr3:150423200-150430000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr3:150423200-150451600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr3:150423400-150427000	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr3:150423400-150427200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr3:150423400-150428400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr3:150423400-150429800	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr3:150423400-150430000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr3:150423600-150439400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr3:150423800-150427000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr3:150423800-150427600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr3:150423800-150439400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr3:150425200-150429000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr3:150425200-150429200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr3:150425200-150430000	Strong transcription	Primary T cells from cord blood	blood
49	chr3:150425400-150426200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr3:150425600-150426200	Strong transcription	Primary B cells from cord blood	blood

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