Variant report
| Variant | rs7631055 |
|---|---|
| Chromosome Location | chr3:150407158-150407159 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000244265 | Chromatin interaction |
| ENSG00000144895 | Chromatin interaction |
| ENSG00000120742 | Chromatin interaction |
| ENSG00000181788 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11713173 | 0.89[EUR][1000 genomes] |
| rs12054209 | 0.98[AFR][1000 genomes] |
| rs12630268 | 0.90[EUR][1000 genomes] |
| rs1897488 | 0.90[EUR][1000 genomes] |
| rs1897490 | 0.93[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes] |
| rs1897492 | 0.90[EUR][1000 genomes] |
| rs1897493 | 0.89[EUR][1000 genomes] |
| rs2116688 | 0.90[EUR][1000 genomes] |
| rs2116689 | 0.90[EUR][1000 genomes] |
| rs2869474 | 0.89[EUR][1000 genomes] |
| rs2904115 | 0.90[EUR][1000 genomes] |
| rs4234312 | 0.90[EUR][1000 genomes] |
| rs4679786 | 0.93[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes] |
| rs4679799 | 0.86[EUR][1000 genomes] |
| rs4680240 | 0.90[EUR][1000 genomes] |
| rs6795266 | 1.00[JPT][hapmap] |
| rs7427065 | 0.90[EUR][1000 genomes] |
| rs7652598 | 0.91[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes] |
| rs9682304 | 0.89[EUR][1000 genomes] |
| rs9823709 | 0.89[EUR][1000 genomes] |
| rs9832682 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9841228 | 0.89[EUR][1000 genomes] |
| rs9859732 | 1.00[JPT][hapmap] |
| rs9876907 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532662 | chr3:150180747-150633414 | Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 101 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:150404800-150407200 | Enhancers | K562 | blood |
