The 2.0 version of rSNPBase

Variant report

Variant rs2116689
Chromosome Location chr3:150427124-150427125
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:150422000-150430400 Weak transcription Spleen Spleen
2 chr3:150422200-150428000 Weak transcription Primary T helper naive cells from peripheral blood blood
3 chr3:150422200-150428200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr3:150422200-150429800 Weak transcription Pancreas Pancrea
5 chr3:150422200-150439400 Weak transcription Ovary ovary
6 chr3:150422200-150443200 Weak transcription Lung lung
7 chr3:150422400-150427200 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr3:150422400-150428200 Weak transcription Brain Anterior Caudate brain
9 chr3:150422400-150428600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
10 chr3:150422400-150429800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
11 chr3:150422400-150430000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
12 chr3:150422400-150434800 Weak transcription Duodenum Smooth Muscle Duodenum
13 chr3:150422400-150443000 Weak transcription Placenta Amnion Placenta Amnion
14 chr3:150422600-150427600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
15 chr3:150422600-150427600 Weak transcription Fetal Stomach stomach
16 chr3:150422600-150427800 Weak transcription Left Ventricle heart
17 chr3:150422600-150428000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr3:150422600-150428200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
19 chr3:150422600-150428200 Weak transcription Aorta Aorta
20 chr3:150422600-150428200 Weak transcription Fetal Adrenal Gland Adrenal Gland
21 chr3:150422600-150428200 Weak transcription Osteobl bone
22 chr3:150422600-150428600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr3:150422600-150429800 Weak transcription Placenta Placenta
24 chr3:150422600-150429800 Weak transcription Thymus Thymus
25 chr3:150422600-150431000 Weak transcription Cortex derived primary cultured neurospheres brain
26 chr3:150422600-150439200 Weak transcription Primary B cells from peripheral blood blood
27 chr3:150422600-150439200 Weak transcription Fetal Intestine Small intestine
28 chr3:150422600-150439400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
29 chr3:150422600-150439400 Weak transcription Adipose Nuclei Adipose
30 chr3:150422600-150441800 Weak transcription Sigmoid Colon Sigmoid Colon
31 chr3:150423200-150428200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
32 chr3:150423200-150430000 Weak transcription Primary T helper naive cells fromperipheralblood blood
33 chr3:150423200-150451600 Weak transcription Breast Myoepithelial Primary Cells Breast
34 chr3:150423400-150427200 Weak transcription Primary T regulatory cells fromperipheralblood blood
35 chr3:150423400-150428400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
36 chr3:150423400-150429800 Weak transcription Primary T helper cells PMA-I stimulated --
37 chr3:150423400-150430000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
38 chr3:150423600-150439400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
39 chr3:150423800-150427600 Weak transcription Primary T killer naive cells fromperipheralblood blood
40 chr3:150423800-150439400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
41 chr3:150425200-150429000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
42 chr3:150425200-150429200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
43 chr3:150425200-150430000 Strong transcription Primary T cells from cord blood blood
44 chr3:150425600-150428000 Strong transcription Primary hematopoietic stem cells blood
45 chr3:150426000-150427600 Weak transcription Primary hematopoietic stem cells short term culture blood
46 chr3:150426000-150429000 Weak transcription A549 lung
47 chr3:150426000-150429400 Strong transcription Fetal Thymus thymus
48 chr3:150426000-150430400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr3:150426200-150427600 Weak transcription Primary B cells from cord blood blood
50 chr3:150426200-150428000 Weak transcription Fetal Muscle Trunk muscle

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Last update: Aug 31, 2015