Variant report

Variant	rs189857054
Chromosome Location	chr9:13278065-13278066
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:13275549..13278427-chr9:13279998..13281670,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv892583	chr9:13166139-13350478	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv892584	chr9:13214871-13350478	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv427838	chr9:13229753-13393890	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3376897	chr9:13277977-13280925	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13265600-13278200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:13270000-13278200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:13273200-13278200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:13275400-13278200	Weak transcription	Liver	Liver
5	chr9:13275600-13278200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:13275600-13278200	Weak transcription	Left Ventricle	heart
7	chr9:13275600-13278200	Weak transcription	Psoas Muscle	Psoas
8	chr9:13275600-13278200	Weak transcription	NHEK	skin
9	chr9:13276000-13278200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr9:13277600-13278200	Enhancers	Placenta	Placenta
11	chr9:13277600-13278200	Enhancers	Lung	lung
12	chr9:13277600-13278400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:13277600-13279800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr9:13277800-13278200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:13277800-13278200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr9:13277800-13278200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr9:13277800-13278200	Flanking Active TSS	Brain Substantia Nigra	brain
18	chr9:13277800-13278200	Flanking Active TSS	Fetal Lung	lung
19	chr9:13277800-13278400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
20	chr9:13277800-13278400	Flanking Active TSS	HUVEC	blood vessel
21	chr9:13277800-13278800	Flanking Active TSS	NH-A	brain
22	chr9:13277800-13280000	Active TSS	Brain Anterior Caudate	brain
23	chr9:13277800-13280000	Active TSS	Colon Smooth Muscle	Colon
24	chr9:13277800-13280000	Active TSS	Fetal Brain Female	brain
25	chr9:13277800-13280000	Active TSS	A549	lung
26	chr9:13277800-13280000	Active TSS	Osteobl	bone
27	chr9:13277800-13280200	Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr9:13277800-13280200	Active TSS	iPS-20b Cell Line	embryonic stem cell
29	chr9:13277800-13280200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr9:13277800-13280200	Active TSS	Aorta	Aorta
31	chr9:13277800-13280200	Active TSS	Duodenum Smooth Muscle	Duodenum
32	chr9:13277800-13280200	Active TSS	NHLF	lung
33	chr9:13277800-13280400	Active TSS	iPS-18 Cell Line	embryonic stem cell
34	chr9:13277800-13280400	Active TSS	Brain Inferior Temporal Lobe	brain
35	chr9:13278000-13278200	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr9:13278000-13278200	Flanking Active TSS	H9 Cell Line	embryonic stem cell
37	chr9:13278000-13278200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:13278000-13278200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr9:13278000-13278200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr9:13278000-13278200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
41	chr9:13278000-13278200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr9:13278000-13278200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
43	chr9:13278000-13278200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr9:13278000-13278200	Flanking Active TSS	Fetal Heart	heart
45	chr9:13278000-13278200	Active TSS	Fetal Muscle Trunk	muscle
46	chr9:13278000-13278200	Flanking Active TSS	Fetal Stomach	stomach
47	chr9:13278000-13278200	Active TSS	Ovary	ovary
48	chr9:13278000-13278200	Enhancers	Pancreas	Pancrea
49	chr9:13278000-13278200	Flanking Active TSS	Rectal Smooth Muscle	rectum
50	chr9:13278000-13278200	Active TSS	Skeletal Muscle Female	skeletal muscle

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