Variant report

Variant	rs1899047
Chromosome Location	chr8:65258301-65258302
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10090928	0.93[EUR][1000 genomes]
rs10096133	0.94[EUR][1000 genomes]
rs10097129	0.82[ASN][1000 genomes]
rs10105633	0.80[ASN][1000 genomes]
rs10105676	0.91[EUR][1000 genomes]
rs10504375	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10957306	0.81[ASN][1000 genomes]
rs13252892	0.81[ASN][1000 genomes]
rs13257322	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1347758	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1371684	0.80[ASN][1000 genomes]
rs1371685	0.80[ASN][1000 genomes]
rs1438229	0.93[EUR][1000 genomes]
rs1440136	0.83[ASN][1000 genomes]
rs1837193	0.93[EUR][1000 genomes]
rs2008164	0.94[EUR][1000 genomes]
rs28643545	0.81[ASN][1000 genomes]
rs4478613	0.81[ASN][1000 genomes]
rs7822866	0.83[ASN][1000 genomes]
rs7824601	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7840001	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7841666	0.83[ASN][1000 genomes]
rs7844448	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7846632	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9298081	0.91[EUR][1000 genomes]
rs9298082	0.91[EUR][1000 genomes]
rs9298083	0.93[EUR][1000 genomes]
rs9772893	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948343	chr8:64804219-65328394	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	esv2761224	chr8:65235506-65259631	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1830069	chr8:65235506-65263721	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1031877	chr8:65240464-65291136	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1809961	chr8:65242166-65268559	Weak transcription Strong transcription Enhancers Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv1809415	chr8:65242166-65272478	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv6230	chr8:65242569-65273236	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv1825065	chr8:65244654-65311200	Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65249600-65260000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:65257800-65260200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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