Variant report

Variant	rs7822866
Chromosome Location	chr8:65209324-65209325
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10087386	0.91[EUR][1000 genomes]
rs10090207	0.85[EUR][1000 genomes]
rs10093773	0.90[EUR][1000 genomes]
rs10097129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10097471	0.89[EUR][1000 genomes]
rs10099867	0.90[EUR][1000 genomes]
rs10103220	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10104164	0.91[EUR][1000 genomes]
rs10105633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10504375	0.85[ASN][1000 genomes]
rs10957306	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12334830	0.91[EUR][1000 genomes]
rs12335124	0.88[EUR][1000 genomes]
rs12708021	0.91[EUR][1000 genomes]
rs13252463	0.88[EUR][1000 genomes]
rs13252892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13254414	0.82[AMR][1000 genomes]
rs13254698	0.88[EUR][1000 genomes]
rs13257322	0.86[ASN][1000 genomes]
rs13262851	0.91[EUR][1000 genomes]
rs13274668	0.91[EUR][1000 genomes]
rs13275299	0.88[EUR][1000 genomes]
rs1347758	0.84[ASN][1000 genomes]
rs1371684	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1371685	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1440135	0.91[EUR][1000 genomes]
rs1440136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1440137	0.87[EUR][1000 genomes]
rs16931063	0.91[EUR][1000 genomes]
rs17223648	0.88[EUR][1000 genomes]
rs17314320	0.84[EUR][1000 genomes]
rs17315206	0.88[EUR][1000 genomes]
rs1899047	0.83[ASN][1000 genomes]
rs2008156	0.91[EUR][1000 genomes]
rs2009633	0.91[EUR][1000 genomes]
rs28631026	0.88[EUR][1000 genomes]
rs28643545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28875492	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28895626	0.85[EUR][1000 genomes]
rs4478613	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62521215	0.91[EUR][1000 genomes]
rs62521216	0.88[EUR][1000 genomes]
rs67633283	0.88[EUR][1000 genomes]
rs7824601	0.84[ASN][1000 genomes]
rs7840001	0.84[ASN][1000 genomes]
rs7841666	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7844448	0.84[ASN][1000 genomes]
rs7846632	0.83[ASN][1000 genomes]
rs971236	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948343	chr8:64804219-65328394	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv890971	chr8:65028814-65242166	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65206200-65212400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:65208400-65209600	Enhancers	GM12878-XiMat	blood

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