Variant report
| Variant | rs7840001 |
|---|---|
| Chromosome Location | chr8:65224967-65224968 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10090928 | 0.97[EUR][1000 genomes] |
| rs10096133 | 0.96[EUR][1000 genomes] |
| rs10097129 | 0.83[ASN][1000 genomes] |
| rs10105633 | 0.81[ASN][1000 genomes] |
| rs10105676 | 0.99[EUR][1000 genomes] |
| rs10504375 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10957306 | 0.81[ASN][1000 genomes] |
| rs13252892 | 0.81[ASN][1000 genomes] |
| rs13257322 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1347758 | 0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1371684 | 0.81[ASN][1000 genomes] |
| rs1371685 | 0.81[ASN][1000 genomes] |
| rs1438229 | 0.97[EUR][1000 genomes] |
| rs1440136 | 0.84[ASN][1000 genomes] |
| rs1837193 | 0.97[EUR][1000 genomes] |
| rs1899047 | 0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2008164 | 0.96[EUR][1000 genomes] |
| rs28643545 | 0.81[ASN][1000 genomes] |
| rs4478613 | 0.81[ASN][1000 genomes] |
| rs7822866 | 0.84[ASN][1000 genomes] |
| rs7824601 | 0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7841666 | 0.84[ASN][1000 genomes] |
| rs7844448 | 0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7846632 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9298081 | 0.99[EUR][1000 genomes] |
| rs9298082 | 0.99[EUR][1000 genomes] |
| rs9298083 | 0.95[EUR][1000 genomes] |
| rs9772893 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948343 | chr8:64804219-65328394 | Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv534001 | chr8:64992196-65798776 | Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| 3 | nsv890971 | chr8:65028814-65242166 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:65213600-65235400 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 2 | chr8:65224800-65225200 | ZNF genes & repeats | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
