Variant report

Variant	rs190068217
Chromosome Location	chr17:15652716-15652717
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:15652569-15652725	A549	lung:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr17:15652715-15652765	SKMC	muscle:	n/a
2	chr17:15652715-15652765	NT2-D1	testis:	n/a
3	chr17:15652715-15652765	AG09319	gingival:	n/a
4	chr17:15652715-15652765	U87	brain:	n/a
5	chr17:15652715-15652765	HCT-116	colon:	n/a
6	chr17:15652715-15652765	GM12892	blood:	n/a
7	chr17:15652715-15652765	NB4	blood:	n/a
8	chr17:15652715-15652765	HAEpiC	amniotic membrane:	n/a
9	chr17:15652715-15652765	PANC-1	pancreas:	n/a
10	chr17:15652715-15652765	ECC-1	luminal epithelium:	n/a
11	chr17:15652715-15652765	PrEC	prostate:	n/a
12	chr17:15652715-15652765	T-47D	breast:	n/a
13	chr17:15652715-15652765	AoSMC	blood vessel:	n/a
14	chr17:15652715-15652765	MCF10A-Er-Src	breast:	n/a
15	chr17:15652715-15652765	CMK	blood:	n/a
16	chr17:15652715-15652765	HepG2	liver:	n/a
17	chr17:15652715-15652765	GM12891	blood:	n/a
18	chr17:15652715-15652765	HRCEpiC	kidney:	n/a
19	chr17:15652715-15652765	ProgFib	skin:	n/a
20	chr17:15652715-15652765	GM06990	blood:	n/a
21	chr17:15652715-15652765	Hela-S3	cervix:	n/a
22	chr17:15652715-15652765	ovcar-3	ovarian:	n/a
23	chr17:15652715-15652765	HCPEpiC	choroid plexus:	n/a
24	chr17:15652715-15652765	BE2_C	brain:	n/a
25	chr17:15652715-15652765	A549	lung:	n/a
26	chr17:15652715-15652765	AG09309	skin:	n/a
27	chr17:15652715-15652765	NHBE	bronchial:	n/a
28	chr17:15652715-15652765	NHDF-neo	bronchial:	n/a
29	chr17:15652715-15652765	AG10803	skin:	n/a
30	chr17:15652715-15652765	Caco-2	colon:	n/a
31	chr17:15652715-15652765	HIPEpiC	eye:	n/a
32	chr17:15652715-15652765	SK-N-MC	brain:	n/a
33	chr17:15652715-15652765	SK-N-SH_RA	brain:	n/a
34	chr17:15652715-15652765	GM19239	blood:	n/a
35	chr17:15652715-15652765	RPTEC	kidney:	n/a
36	chr17:15652715-15652765	AG04450	lung:	fetal
37	chr17:15652715-15652765	HUVEC	blood vessel:	n/a
38	chr17:15652715-15652765	SAEC	small airway:	n/a
39	chr17:15652715-15652765	HCF	heart:	n/a
40	chr17:15652715-15652765	H1-hESC	embryonic stem cell:	embryo
41	chr17:15652715-15652765	K562	blood:	n/a
42	chr17:15652715-15652765	PFSK-1	brain:	n/a
43	chr17:15652715-15652765	HL-60	blood:	n/a
44	chr17:15652715-15652765	LNCaP	prostate:	n/a
45	chr17:15652715-15652765	MCF-7	breast:	n/a
46	chr17:15652715-15652765	HMEC	breast:	n/a
47	chr17:15652715-15652765	SK-N-SH	brain:	n/a
48	chr17:15652715-15652765	Hepatocyte	liver:	n/a
49	chr17:15652715-15652765	HEEpiC	esophagus:	n/a
50	chr17:15652715-15652765	HCM	heart:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:15646677..15648283-chr17:15650856..15653224,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000267227	TF binding region
ENSG00000233002	TF binding region
ENSG00000267227	CpG island
ENSG00000233002	CpG island
ENSG00000233002	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
4	nsv1062951	chr17:15561070-15890644	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv1066023	chr17:15607267-16053512	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv907705	chr17:15611495-15717546	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	esv10233	chr17:15632283-15677380	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv2421582	chr17:15642546-15677001	Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv3693232	chr17:15644506-15657918	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
10	nsv978562	chr17:15647343-15657695	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
11	nsv524553	chr17:15647723-15679601	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv960061	chr17:15648808-15652993	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
13	nsv442410	chr17:15650630-15674005	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	esv3422008	chr17:15651752-15654600	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
15	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15648800-15652800	Weak transcription	Ovary	ovary
2	chr17:15652600-15653000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood

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