Variant report

Variant	rs1901821
Chromosome Location	chr11:76996498-76996499
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10793244	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10793245	0.96[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10793246	0.89[JPT][hapmap]
rs10899364	0.94[JPT][hapmap]
rs10899365	0.89[JPT][hapmap]
rs10899369	0.89[JPT][hapmap]
rs11237145	0.90[JPT][hapmap]
rs11237146	0.89[JPT][hapmap]
rs11237147	0.89[JPT][hapmap]
rs11600983	0.81[EUR][1000 genomes]
rs11607378	0.86[EUR][1000 genomes]
rs12274255	0.90[JPT][hapmap]
rs12287216	0.90[JPT][hapmap]
rs12287680	0.90[JPT][hapmap];1.00[YRI][hapmap]
rs1613357	0.90[JPT][hapmap]
rs1618188	0.89[JPT][hapmap]
rs1620915	0.90[JPT][hapmap]
rs1670451	0.89[JPT][hapmap]
rs1670452	0.90[JPT][hapmap]
rs1670453	0.90[JPT][hapmap]
rs1670460	0.95[JPT][hapmap]
rs1793466	0.95[JPT][hapmap]
rs1793467	0.94[JPT][hapmap]
rs1793488	0.89[JPT][hapmap]
rs1894214	0.89[JPT][hapmap]
rs1946005	0.89[JPT][hapmap]
rs2007466	0.85[EUR][1000 genomes]
rs2602486	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2725812	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs28420990	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2853096	0.94[JPT][hapmap]
rs3015989	0.82[CEU][hapmap]
rs3015993	0.82[CEU][hapmap]
rs34420077	0.87[EUR][1000 genomes]
rs4433591	0.87[EUR][1000 genomes]
rs476925	0.83[CEU][hapmap]
rs4944153	0.81[EUR][1000 genomes]
rs4944155	0.86[EUR][1000 genomes]
rs4945162	0.86[CEU][hapmap]
rs4945166	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs4945168	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs495889	0.82[CEU][hapmap]
rs514191	0.83[CEU][hapmap]
rs57129983	0.86[EUR][1000 genomes]
rs575662	0.82[CEU][hapmap]
rs61901769	0.87[EUR][1000 genomes]
rs61901771	0.83[EUR][1000 genomes]
rs61901802	0.82[EUR][1000 genomes]
rs6592715	0.82[EUR][1000 genomes]
rs674652	0.83[CEU][hapmap]
rs7104166	0.89[JPT][hapmap]
rs7104295	0.90[JPT][hapmap]
rs7118869	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs7121483	0.90[JPT][hapmap]
rs7928731	0.86[EUR][1000 genomes]
rs7938075	0.90[JPT][hapmap]
rs948971	0.91[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9634031	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534515	chr11:76900813-77035769	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76990200-76998000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:76990600-76998000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr11:76990600-76998200	Weak transcription	HSMM	muscle
4	chr11:76994400-76998600	Weak transcription	HSMMtube	muscle
5	chr11:76995600-76998000	Weak transcription	Osteobl	bone
6	chr11:76995800-76998200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:76996000-76998000	Weak transcription	NHDF-Ad	bronchial
8	chr11:76996000-76998200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:76996200-76997400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:76996400-76996800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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