Variant report

Variant	rs2725812
Chromosome Location	chr11:77020472-77020473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10793248	0.91[EUR][1000 genomes]
rs10899379	0.82[JPT][hapmap]
rs11237155	0.81[MKK][hapmap]
rs11600983	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11607378	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1225479	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1670459	0.86[JPT][hapmap]
rs1793476	0.80[CHD][hapmap];0.86[JPT][hapmap]
rs1793483	0.86[JPT][hapmap]
rs1901821	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs2007466	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2602465	0.90[JPT][hapmap]
rs2602472	0.82[JPT][hapmap]
rs2729762	0.91[JPT][hapmap]
rs2844333	0.91[JPT][hapmap]
rs2853097	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3015984	0.89[EUR][1000 genomes]
rs3015989	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs3015991	0.88[EUR][1000 genomes]
rs3015993	1.00[CEU][hapmap];0.82[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs3019240	0.89[EUR][1000 genomes]
rs3019258	0.91[EUR][1000 genomes]
rs34420077	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4433591	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs473012	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs476925	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs478134	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs478475	0.92[EUR][1000 genomes]
rs482243	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs487322	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs489038	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs491781	0.81[EUR][1000 genomes]
rs492527	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4944153	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4944155	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4944158	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4945162	0.81[ASW][hapmap];0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.81[MKK][hapmap];0.88[TSI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4945166	0.81[ASW][hapmap];0.90[CEU][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.81[MKK][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4945168	0.82[EUR][1000 genomes]
rs4945169	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs495889	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs497172	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs497946	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs499880	0.88[EUR][1000 genomes]
rs500731	0.88[EUR][1000 genomes]
rs514191	1.00[CEU][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs517511	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs538670	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs539906	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs556696	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs561153	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs562939	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs568309	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57129983	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs575662	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs576079	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs576997	0.92[EUR][1000 genomes]
rs584909	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs599437	0.95[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs605910	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs614775	0.91[EUR][1000 genomes]
rs618012	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61901769	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61901771	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61901802	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs628325	0.91[EUR][1000 genomes]
rs635291	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs639857	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6592714	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6592715	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs667331	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs674652	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap]
rs683497	0.92[EUR][1000 genomes]
rs688212	0.95[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7118869	0.95[CEU][hapmap];0.95[JPT][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7928731	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs883223	0.81[ASW][hapmap];0.87[CEU][hapmap];0.98[CHD][hapmap];0.86[GIH][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap]
rs948971	0.81[TSI][hapmap]
rs98703	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534515	chr11:76900813-77035769	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77015200-77027600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr11:77020200-77020800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr11:77020200-77021000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr11:77020200-77021000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr11:77020200-77021000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:77020200-77021000	Enhancers	Ovary	ovary
7	chr11:77020200-77021200	Enhancers	NHDF-Ad	bronchial
8	chr11:77020400-77020600	Enhancers	HSMM	muscle
9	chr11:77020400-77021000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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