Variant report

Variant	rs3015984
Chromosome Location	chr11:77166130-77166131
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10793248	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899379	0.96[JPT][hapmap];0.83[ASN][1000 genomes]
rs11607378	0.81[EUR][1000 genomes]
rs1225479	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1670459	0.82[JPT][hapmap]
rs1793476	0.82[JPT][hapmap]
rs1793483	0.82[JPT][hapmap]
rs1901821	0.82[CEU][hapmap]
rs2602458	0.83[ASN][1000 genomes]
rs2602465	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs2602472	0.95[JPT][hapmap]
rs2725812	1.00[CEU][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes]
rs2725830	0.83[ASN][1000 genomes]
rs2729762	0.86[JPT][hapmap]
rs2844333	0.87[JPT][hapmap]
rs2853097	0.90[EUR][1000 genomes]
rs3015989	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3015991	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3015993	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3019240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3019243	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3019258	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34420077	0.81[EUR][1000 genomes]
rs4433591	0.82[EUR][1000 genomes]
rs473012	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs476925	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs478134	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs478475	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs482243	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs487322	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs489038	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs491781	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs492527	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4944155	0.81[EUR][1000 genomes]
rs4944158	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4945162	0.80[EUR][1000 genomes]
rs4945166	0.90[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.81[EUR][1000 genomes]
rs4945169	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs495889	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs497172	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs497946	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs499880	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs500731	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs514191	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs517511	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs538670	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs539906	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs556696	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs561153	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs562939	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs568309	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57129983	0.81[EUR][1000 genomes]
rs575662	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs576079	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs576997	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs584909	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs599437	0.95[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs605910	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs614775	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs618012	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61901769	0.80[EUR][1000 genomes]
rs61901802	0.87[EUR][1000 genomes]
rs628325	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs635291	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs639857	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6592715	0.83[EUR][1000 genomes]
rs667331	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs674652	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs683497	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs688212	0.95[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7118869	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes]
rs7119033	0.83[ASN][1000 genomes]
rs721382	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73496890	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7928731	0.81[EUR][1000 genomes]
rs98703	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1037724	chr11:77061945-77250391	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv541091	chr11:77061945-77250391	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv3437433	chr11:77101280-77291686	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77152800-77166400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:77153600-77168600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:77155400-77181400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:77157000-77168400	Weak transcription	Small Intestine	intestine
5	chr11:77158200-77168600	Weak transcription	Stomach Mucosa	stomach
6	chr11:77158400-77169800	Weak transcription	Fetal Intestine Large	intestine
7	chr11:77159800-77168400	Weak transcription	Fetal Brain Female	brain
8	chr11:77160200-77169400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:77160600-77178000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:77160800-77167000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:77161000-77170200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr11:77161200-77167400	Weak transcription	Brain Hippocampus Middle	brain
13	chr11:77161200-77179200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:77162400-77166800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr11:77162400-77167000	Weak transcription	Primary B cells from cord blood	blood
16	chr11:77162400-77167200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:77162400-77167400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:77162400-77168000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr11:77162600-77166200	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr11:77162600-77166400	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr11:77163000-77173400	Weak transcription	Placenta	Placenta
22	chr11:77163800-77166200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr11:77164000-77169800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr11:77165000-77166600	Enhancers	H9 Cell Line	embryonic stem cell
25	chr11:77165000-77168200	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr11:77165000-77172200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:77165200-77166800	Weak transcription	Fetal Intestine Small	intestine
28	chr11:77165200-77166800	Enhancers	GM12878-XiMat	blood
29	chr11:77165200-77170800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:77165400-77166600	Enhancers	Ovary	ovary
31	chr11:77165400-77168200	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr11:77165600-77167000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:77165600-77168200	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr11:77165600-77168200	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr11:77165800-77168600	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr11:77165800-77171200	Enhancers	H1 Cell Line	embryonic stem cell
37	chr11:77166000-77167600	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr11:77166000-77167800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:77166000-77168400	Enhancers	HUES48 Cell Line	embryonic stem cell

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