Variant report

Variant	rs73496890
Chromosome Location	chr11:77188532-77188533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10793248	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3015984	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3015989	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3015991	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3015993	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3019240	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3019243	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3019258	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs473012	0.84[EUR][1000 genomes]
rs476925	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs478134	0.82[EUR][1000 genomes]
rs478475	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs482243	0.80[EUR][1000 genomes]
rs487322	0.82[EUR][1000 genomes]
rs489038	0.81[EUR][1000 genomes]
rs492527	0.83[EUR][1000 genomes]
rs4944158	0.80[EUR][1000 genomes]
rs4945169	0.80[EUR][1000 genomes]
rs495889	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs497172	0.80[EUR][1000 genomes]
rs497946	0.85[EUR][1000 genomes]
rs499880	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs500731	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs514191	0.81[EUR][1000 genomes]
rs517511	0.85[EUR][1000 genomes]
rs538670	0.84[EUR][1000 genomes]
rs539906	0.85[EUR][1000 genomes]
rs556696	0.81[EUR][1000 genomes]
rs561153	0.85[EUR][1000 genomes]
rs562939	0.85[EUR][1000 genomes]
rs568309	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs575662	0.83[EUR][1000 genomes]
rs576079	0.83[EUR][1000 genomes]
rs576997	0.84[EUR][1000 genomes]
rs584909	0.82[EUR][1000 genomes]
rs599437	0.83[EUR][1000 genomes]
rs605910	0.85[EUR][1000 genomes]
rs614775	0.84[EUR][1000 genomes]
rs628325	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs635291	0.85[EUR][1000 genomes]
rs639857	0.81[EUR][1000 genomes]
rs667331	0.84[EUR][1000 genomes]
rs683497	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs688212	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs98703	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1037724	chr11:77061945-77250391	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv541091	chr11:77061945-77250391	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv3437433	chr11:77101280-77291686	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77185800-77190200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:77185800-77190200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:77186000-77190200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:77186000-77190200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:77186000-77190200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:77186000-77190200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:77186000-77190200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr11:77186000-77190800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:77187600-77190000	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr11:77187600-77190400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr11:77187800-77190200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:77187800-77190200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr11:77187800-77190200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:77187800-77190200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr11:77188400-77189400	Enhancers	HepG2	liver

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