Variant report

Variant	rs4945169
Chromosome Location	chr11:77026510-77026511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10793248	0.93[EUR][1000 genomes]
rs11600983	0.85[EUR][1000 genomes]
rs11607378	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1225479	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2007466	0.88[EUR][1000 genomes]
rs2725812	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2729762	0.81[ASN][1000 genomes]
rs2853097	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3015984	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3015989	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3015991	0.89[EUR][1000 genomes]
rs3015993	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3019240	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3019258	0.93[EUR][1000 genomes]
rs34420077	0.89[EUR][1000 genomes]
rs4433591	0.90[EUR][1000 genomes]
rs473012	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs476925	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs478134	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs478475	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs482243	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs487322	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs489038	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs491781	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs492527	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4944153	0.84[EUR][1000 genomes]
rs4944155	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4944158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945162	0.84[EUR][1000 genomes]
rs4945166	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4945168	0.80[EUR][1000 genomes]
rs495889	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs497172	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs497946	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs499880	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs500731	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs514191	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs517511	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs538670	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs539906	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs556696	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs561153	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs562939	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs568309	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57129983	0.89[EUR][1000 genomes]
rs575662	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs576079	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs576997	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs584909	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs599437	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs605910	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs614775	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs618012	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61901769	0.89[EUR][1000 genomes]
rs61901771	0.86[EUR][1000 genomes]
rs61901802	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs628325	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs635291	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs639857	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6592714	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6592715	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs667331	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs683497	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs688212	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7118869	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73496890	0.80[EUR][1000 genomes]
rs7928731	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs98703	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534515	chr11:76900813-77035769	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv975950	chr11:77023974-77027331	Weak transcription Enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77015200-77027600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr11:77020800-77032000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr11:77020800-77033200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:77021000-77032600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:77022400-77032000	Weak transcription	Fetal Intestine Large	intestine
6	chr11:77024800-77032000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:77025000-77033000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:77025000-77033000	Weak transcription	HSMMtube	muscle
9	chr11:77025000-77033000	Weak transcription	NHLF	lung
10	chr11:77025000-77033200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr11:77025000-77033200	Weak transcription	NHDF-Ad	bronchial
12	chr11:77025000-77033400	Weak transcription	NH-A	brain
13	chr11:77025000-77034200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:77025400-77027600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:77025400-77033400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:77025400-77037600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:77026200-77027200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links