Variant report

Variant	rs61901769
Chromosome Location	chr11:76994097-76994098
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76987750..76989458-chr11:76993582..76995503,2	MCF-7	breast:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10793244	0.81[EUR][1000 genomes]
rs10793245	0.81[EUR][1000 genomes]
rs10793248	0.82[EUR][1000 genomes]
rs11237155	0.87[AFR][1000 genomes]
rs11600983	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11607378	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11824060	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1225479	0.83[EUR][1000 genomes]
rs1901821	0.87[EUR][1000 genomes]
rs2007466	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2602486	0.83[EUR][1000 genomes]
rs2725812	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28420990	0.82[EUR][1000 genomes]
rs2853097	0.86[EUR][1000 genomes]
rs3015984	0.80[EUR][1000 genomes]
rs3015989	0.81[EUR][1000 genomes]
rs3019240	0.80[EUR][1000 genomes]
rs3019258	0.82[EUR][1000 genomes]
rs34420077	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4433591	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs473012	0.84[EUR][1000 genomes]
rs476925	0.83[EUR][1000 genomes]
rs478134	0.84[EUR][1000 genomes]
rs478475	0.82[EUR][1000 genomes]
rs482243	0.89[EUR][1000 genomes]
rs487322	0.86[EUR][1000 genomes]
rs489038	0.85[EUR][1000 genomes]
rs492527	0.85[EUR][1000 genomes]
rs4944153	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4944155	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4944158	0.89[EUR][1000 genomes]
rs4945162	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4945166	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4945168	0.87[EUR][1000 genomes]
rs4945169	0.89[EUR][1000 genomes]
rs495889	0.83[EUR][1000 genomes]
rs497946	0.83[EUR][1000 genomes]
rs514191	0.85[EUR][1000 genomes]
rs517511	0.83[EUR][1000 genomes]
rs538670	0.82[EUR][1000 genomes]
rs539906	0.83[EUR][1000 genomes]
rs556696	0.85[EUR][1000 genomes]
rs561153	0.83[EUR][1000 genomes]
rs562939	0.83[EUR][1000 genomes]
rs568309	0.82[EUR][1000 genomes]
rs57129983	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs575662	0.85[EUR][1000 genomes]
rs576079	0.85[EUR][1000 genomes]
rs576997	0.82[EUR][1000 genomes]
rs584909	0.81[EUR][1000 genomes]
rs599437	0.85[EUR][1000 genomes]
rs605910	0.83[EUR][1000 genomes]
rs614775	0.82[EUR][1000 genomes]
rs61901771	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61901802	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs628325	0.82[EUR][1000 genomes]
rs635291	0.83[EUR][1000 genomes]
rs639857	0.85[EUR][1000 genomes]
rs6592714	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6592715	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs667331	0.82[EUR][1000 genomes]
rs683497	0.83[EUR][1000 genomes]
rs688212	0.83[EUR][1000 genomes]
rs7118869	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7928731	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7936156	0.84[AFR][1000 genomes]
rs883223	0.82[EUR][1000 genomes]
rs98703	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534515	chr11:76900813-77035769	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76990200-76995000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:76990200-76998000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:76990600-76994600	Weak transcription	Osteobl	bone
4	chr11:76990600-76995000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:76990600-76995600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:76990600-76998000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr11:76990600-76998200	Weak transcription	HSMM	muscle
8	chr11:76994000-76994400	Enhancers	Liver	Liver
9	chr11:76994000-76994400	Enhancers	HSMMtube	muscle

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