Variant report
| Variant | rs1903580 |
|---|---|
| Chromosome Location | chr3:109893840-109893841 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10934015 | 0.81[EUR][1000 genomes] |
| rs10934022 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12233453 | 0.86[EUR][1000 genomes] |
| rs13066598 | 0.83[EUR][1000 genomes] |
| rs1461746 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1461752 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1551797 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1903581 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1993754 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2085918 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs56287426 | 0.97[ASN][1000 genomes] |
| rs59529766 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6769312 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6793709 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6795543 | 0.81[EUR][1000 genomes] |
| rs7623564 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7648707 | 0.81[EUR][1000 genomes] |
| rs7651846 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs964619 | 0.86[EUR][1000 genomes] |
| rs9814013 | 0.81[EUR][1000 genomes] |
| rs9876423 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877332 | chr3:109575764-110186611 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv829667 | chr3:109786662-109939671 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | n/a | n/a | inside rSNPs | diseases |
| 3 | nsv432472 | chr3:109871824-109942107 | Weak transcription Enhancers Flanking Active TSS Active TSS | n/a | n/a | inside rSNPs | diseases |
| 4 | nsv432473 | chr3:109875668-109918190 | Enhancers Flanking Active TSS Weak transcription Active TSS | n/a | n/a | inside rSNPs | diseases |
| 5 | esv2754324 | chr3:109875668-109933826 | Weak transcription Enhancers Flanking Active TSS Active TSS | n/a | n/a | inside rSNPs | diseases |
| 6 | nsv460816 | chr3:109878008-110044601 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | nsv591271 | chr3:109878008-110044601 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:109893600-109894000 | Enhancers | HSMM | muscle |
