Variant report

Variant	rs56287426
Chromosome Location	chr3:109903102-109903103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1015582	0.88[EUR][1000 genomes]
rs10934022	0.97[ASN][1000 genomes]
rs1350856	0.93[EUR][1000 genomes]
rs1381365	0.95[EUR][1000 genomes]
rs1461746	0.94[ASN][1000 genomes]
rs1461752	0.91[ASN][1000 genomes]
rs1551797	0.97[ASN][1000 genomes]
rs16856504	0.95[EUR][1000 genomes]
rs1903580	0.97[ASN][1000 genomes]
rs1903581	0.97[ASN][1000 genomes]
rs1993754	0.97[ASN][1000 genomes]
rs1993755	0.95[EUR][1000 genomes]
rs2085918	0.97[ASN][1000 genomes]
rs55712280	0.94[EUR][1000 genomes]
rs55801320	0.95[EUR][1000 genomes]
rs56069641	0.95[EUR][1000 genomes]
rs58958221	0.95[EUR][1000 genomes]
rs59529766	0.97[ASN][1000 genomes]
rs6769312	0.97[ASN][1000 genomes]
rs67915407	0.86[EUR][1000 genomes]
rs6793709	0.97[ASN][1000 genomes]
rs73213503	0.95[EUR][1000 genomes]
rs73213506	0.95[EUR][1000 genomes]
rs73213508	0.95[EUR][1000 genomes]
rs73215548	0.95[EUR][1000 genomes]
rs7623564	0.97[ASN][1000 genomes]
rs7651846	0.91[ASN][1000 genomes]
rs9876423	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829667	chr3:109786662-109939671	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
3	nsv432472	chr3:109871824-109942107	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv432473	chr3:109875668-109918190	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv2754324	chr3:109875668-109933826	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv460816	chr3:109878008-110044601	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv591271	chr3:109878008-110044601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109900600-109903600	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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