Variant report
| Variant | rs16856504 |
|---|---|
| Chromosome Location | chr3:109951102-109951103 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1015582 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1350856 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1381363 | 0.98[ASN][1000 genomes] |
| rs1381364 | 0.98[ASN][1000 genomes] |
| rs1381365 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1870799 | 0.98[ASN][1000 genomes] |
| rs1993755 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2399299 | 0.98[ASN][1000 genomes] |
| rs4682174 | 0.82[ASN][1000 genomes] |
| rs4682566 | 0.98[ASN][1000 genomes] |
| rs4682567 | 0.98[ASN][1000 genomes] |
| rs55712280 | 0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs55801320 | 0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs56069641 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs56287426 | 0.95[EUR][1000 genomes] |
| rs58958221 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs62284990 | 0.98[ASN][1000 genomes] |
| rs67915407 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73213503 | 0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs73213506 | 0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs73213508 | 0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs73215548 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877332 | chr3:109575764-110186611 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv460816 | chr3:109878008-110044601 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv591271 | chr3:109878008-110044601 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:109950000-109954200 | Weak transcription | H9 Cell Line | embryonic stem cell |
