Variant report

Variant	rs1993755
Chromosome Location	chr3:109913080-109913081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1015582	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10934015	0.84[ASN][1000 genomes]
rs13066598	0.84[ASN][1000 genomes]
rs1350856	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1381363	0.86[ASN][1000 genomes]
rs1381364	0.86[ASN][1000 genomes]
rs1381365	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16856504	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1870799	0.86[ASN][1000 genomes]
rs1914855	0.84[ASN][1000 genomes]
rs2126285	0.83[ASN][1000 genomes]
rs2169401	0.83[ASN][1000 genomes]
rs2399299	0.86[ASN][1000 genomes]
rs4393940	0.82[ASN][1000 genomes]
rs4469005	0.84[ASN][1000 genomes]
rs4682174	0.93[ASN][1000 genomes]
rs4682566	0.86[ASN][1000 genomes]
rs4682567	0.86[ASN][1000 genomes]
rs55712280	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55801320	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56069641	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56287426	0.95[EUR][1000 genomes]
rs58958221	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62284990	0.86[ASN][1000 genomes]
rs6414243	0.91[ASN][1000 genomes]
rs6437893	0.83[ASN][1000 genomes]
rs6788747	0.91[ASN][1000 genomes]
rs67915407	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6795543	0.82[ASN][1000 genomes]
rs73213503	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73213506	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73213508	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73215548	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7434250	0.91[ASN][1000 genomes]
rs9814013	0.84[ASN][1000 genomes]
rs9849346	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829667	chr3:109786662-109939671	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
3	nsv432472	chr3:109871824-109942107	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv432473	chr3:109875668-109918190	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv2754324	chr3:109875668-109933826	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv460816	chr3:109878008-110044601	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv591271	chr3:109878008-110044601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2752610	chr3:109906409-109918190	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	nsv432475	chr3:109906409-109918190	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1993755	TIGIT	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109911200-109913200	Enhancers	Fetal Heart	heart
2	chr3:109912000-109913400	Enhancers	Placenta Amnion	Placenta Amnion

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