Variant report
| Variant | rs1015582 |
|---|---|
| Chromosome Location | chr3:109873307-109873308 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10934015 | 0.93[ASN][1000 genomes] |
| rs13066598 | 0.93[ASN][1000 genomes] |
| rs1350856 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1356632 | 0.88[ASN][1000 genomes] |
| rs1381365 | 0.93[EUR][1000 genomes] |
| rs16856504 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1914855 | 0.93[ASN][1000 genomes] |
| rs1993755 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2126285 | 0.91[ASN][1000 genomes] |
| rs2169401 | 0.91[ASN][1000 genomes] |
| rs4393940 | 0.91[ASN][1000 genomes] |
| rs4469005 | 0.93[ASN][1000 genomes] |
| rs4682174 | 0.98[ASN][1000 genomes] |
| rs55712280 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs55801320 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs56069641 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs56287426 | 0.88[EUR][1000 genomes] |
| rs58958221 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6414243 | 1.00[ASN][1000 genomes] |
| rs6437893 | 0.91[ASN][1000 genomes] |
| rs6788747 | 1.00[ASN][1000 genomes] |
| rs67915407 | 0.84[EUR][1000 genomes] |
| rs6795543 | 0.91[ASN][1000 genomes] |
| rs73213503 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs73213506 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs73213508 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs73215548 | 0.93[EUR][1000 genomes] |
| rs7434250 | 1.00[ASN][1000 genomes] |
| rs9814013 | 0.93[ASN][1000 genomes] |
| rs9849346 | 0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877332 | chr3:109575764-110186611 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv829667 | chr3:109786662-109939671 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | n/a | n/a | inside rSNPs | diseases |
| 3 | nsv432472 | chr3:109871824-109942107 | Weak transcription Enhancers Flanking Active TSS Active TSS | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:109872800-109873600 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
