Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1015582	0.88[ASN][1000 genomes]
rs10934012	0.96[EUR][1000 genomes]
rs10934015	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13066598	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13069465	0.87[EUR][1000 genomes]
rs13078915	0.86[EUR][1000 genomes]
rs1568315	0.94[EUR][1000 genomes]
rs1914855	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2126285	0.81[ASN][1000 genomes]
rs2169401	0.81[ASN][1000 genomes]
rs4324487	0.86[EUR][1000 genomes]
rs4393940	0.93[ASN][1000 genomes]
rs4469005	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4682174	0.86[ASN][1000 genomes]
rs6414243	0.88[ASN][1000 genomes]
rs6437893	0.81[ASN][1000 genomes]
rs6788747	0.88[ASN][1000 genomes]
rs6795543	0.93[ASN][1000 genomes]
rs7434250	0.88[ASN][1000 genomes]
rs7616528	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7623780	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7648707	0.82[EUR][1000 genomes]
rs9814013	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9849346	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9879682	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829667	chr3:109786662-109939671	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109818200-109819000	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr3:109818200-109819400	Enhancers	HUES64 Cell Line	embryonic stem cell

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