Variant report

Variant	rs7616528
Chromosome Location	chr3:109819784-109819785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10934012	0.96[EUR][1000 genomes]
rs10934015	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13066598	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13069465	0.87[EUR][1000 genomes]
rs13078915	0.86[EUR][1000 genomes]
rs1356632	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1568315	0.94[EUR][1000 genomes]
rs1914855	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2126285	0.87[ASN][1000 genomes]
rs2169401	0.87[ASN][1000 genomes]
rs4324487	0.86[EUR][1000 genomes]
rs4393940	0.82[ASN][1000 genomes]
rs4469005	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6437893	0.87[ASN][1000 genomes]
rs6795543	0.82[ASN][1000 genomes]
rs7648707	0.82[EUR][1000 genomes]
rs9814013	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9849346	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829667	chr3:109786662-109939671	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109819000-109820000	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr3:109819000-109821400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:109819400-109820400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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