Variant report

Variant	rs13069465
Chromosome Location	chr3:109811524-109811525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10934011	0.91[ASN][1000 genomes]
rs10934012	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11719423	0.93[ASN][1000 genomes]
rs13078915	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs13090190	0.93[ASN][1000 genomes]
rs13099279	0.91[ASN][1000 genomes]
rs1356632	0.87[EUR][1000 genomes]
rs1568315	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1997106	0.86[ASN][1000 genomes]
rs1997107	0.86[ASN][1000 genomes]
rs1997108	0.86[ASN][1000 genomes]
rs2102870	0.91[ASN][1000 genomes]
rs4324487	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6806171	0.93[ASN][1000 genomes]
rs7616528	0.87[EUR][1000 genomes]
rs7642520	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9880305	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829667	chr3:109786662-109939671	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109803000-109811600	Weak transcription	Aorta	Aorta
2	chr3:109808800-109812200	Weak transcription	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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