Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10934012	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10934015	0.93[EUR][1000 genomes]
rs10934022	0.81[EUR][1000 genomes]
rs11916299	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12233453	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13066598	0.94[EUR][1000 genomes]
rs13069465	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs13078915	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1356632	0.86[EUR][1000 genomes]
rs1461752	0.80[EUR][1000 genomes]
rs1568315	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1914855	0.89[EUR][1000 genomes]
rs4469005	0.89[EUR][1000 genomes]
rs59529766	0.81[EUR][1000 genomes]
rs6795543	0.92[EUR][1000 genomes]
rs7616528	0.86[EUR][1000 genomes]
rs7623564	0.80[EUR][1000 genomes]
rs7642520	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7648707	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs964619	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9814013	0.93[EUR][1000 genomes]
rs9849346	0.89[EUR][1000 genomes]
rs9876423	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829667	chr3:109786662-109939671	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
3	nsv1003617	chr3:109822033-109865265	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv3940	chr3:109825950-109870342	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	nsv516356	chr3:109857797-109858111	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4324487	KIAA2018	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109854200-109859000	Weak transcription	Aorta	Aorta
2	chr3:109857600-109858200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:109857800-109858200	Enhancers	Fetal Stomach	stomach
4	chr3:109858000-109859000	Weak transcription	Fetal Muscle Leg	muscle

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