Variant report
| Variant | rs11916299 |
|---|---|
| Chromosome Location | chr3:109871824-109871825 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10934012 | 0.89[ASN][1000 genomes] |
| rs10934015 | 0.85[EUR][1000 genomes] |
| rs10934022 | 0.81[EUR][1000 genomes] |
| rs12233453 | 0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs13066598 | 0.87[EUR][1000 genomes] |
| rs13078915 | 0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1461752 | 0.80[EUR][1000 genomes] |
| rs1568315 | 0.86[ASN][1000 genomes] |
| rs1914855 | 0.82[EUR][1000 genomes] |
| rs4324487 | 0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4469005 | 0.82[EUR][1000 genomes] |
| rs59529766 | 0.81[EUR][1000 genomes] |
| rs6795543 | 0.85[EUR][1000 genomes] |
| rs7623564 | 0.80[EUR][1000 genomes] |
| rs7642520 | 0.90[ASN][1000 genomes] |
| rs7648707 | 0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs964619 | 0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9814013 | 0.85[EUR][1000 genomes] |
| rs9849346 | 0.82[EUR][1000 genomes] |
| rs9876423 | 0.80[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877332 | chr3:109575764-110186611 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv829667 | chr3:109786662-109939671 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | n/a | n/a | inside rSNPs | diseases |
| 3 | nsv432472 | chr3:109871824-109942107 | Weak transcription Enhancers Flanking Active TSS Active TSS | n/a | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs11916299 | KIAA2018 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:109868800-109872200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
