Variant report

Variant	rs4469005
Chromosome Location	chr3:109831919-109831920
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1015582	0.93[ASN][1000 genomes]
rs10934012	0.82[EUR][1000 genomes]
rs10934015	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11916299	0.82[EUR][1000 genomes]
rs12233453	0.81[EUR][1000 genomes]
rs13066598	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13078915	0.89[EUR][1000 genomes]
rs1350856	0.84[ASN][1000 genomes]
rs1356632	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1568315	0.85[EUR][1000 genomes]
rs1914855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1993755	0.84[ASN][1000 genomes]
rs2126285	0.85[ASN][1000 genomes]
rs2169401	0.85[ASN][1000 genomes]
rs4324487	0.89[EUR][1000 genomes]
rs4393940	0.98[ASN][1000 genomes]
rs4682174	0.90[ASN][1000 genomes]
rs55712280	0.84[ASN][1000 genomes]
rs55801320	0.84[ASN][1000 genomes]
rs56069641	0.84[ASN][1000 genomes]
rs58958221	0.84[ASN][1000 genomes]
rs6414243	0.93[ASN][1000 genomes]
rs6437893	0.85[ASN][1000 genomes]
rs6788747	0.93[ASN][1000 genomes]
rs6795543	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73213503	0.84[ASN][1000 genomes]
rs73213506	0.84[ASN][1000 genomes]
rs73213508	0.84[ASN][1000 genomes]
rs7434250	0.93[ASN][1000 genomes]
rs7616528	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7623780	0.85[ASN][1000 genomes]
rs7648707	0.86[EUR][1000 genomes]
rs964619	0.81[EUR][1000 genomes]
rs9814013	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9849346	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9879682	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829667	chr3:109786662-109939671	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
3	nsv1003617	chr3:109822033-109865265	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv3940	chr3:109825950-109870342	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4469005	KIAA2018	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109830600-109832000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr3:109831200-109832400	Enhancers	Fetal Heart	heart

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