Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1015582	1.00[ASN][1000 genomes]
rs10934015	0.93[ASN][1000 genomes]
rs13066598	0.93[ASN][1000 genomes]
rs1350856	0.91[ASN][1000 genomes]
rs1356632	0.88[ASN][1000 genomes]
rs1914855	0.93[ASN][1000 genomes]
rs1993755	0.91[ASN][1000 genomes]
rs2126285	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2169401	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4393940	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4469005	0.93[ASN][1000 genomes]
rs4682174	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55712280	0.91[ASN][1000 genomes]
rs55801320	0.91[ASN][1000 genomes]
rs56069641	0.91[ASN][1000 genomes]
rs58958221	0.91[ASN][1000 genomes]
rs6414243	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6437893	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6795543	0.91[ASN][1000 genomes]
rs73213503	0.91[ASN][1000 genomes]
rs73213506	0.91[ASN][1000 genomes]
rs73213508	0.91[ASN][1000 genomes]
rs7434250	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814013	0.93[ASN][1000 genomes]
rs9849346	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829667	chr3:109786662-109939671	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
3	nsv432472	chr3:109871824-109942107	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv432473	chr3:109875668-109918190	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv2754324	chr3:109875668-109933826	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv460816	chr3:109878008-110044601	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv591271	chr3:109878008-110044601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109876600-109884400	Weak transcription	Aorta	Aorta
2	chr3:109882000-109883600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:109882200-109884000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:109882200-109884200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr3:109882400-109883600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr3:109882400-109883800	Weak transcription	Ovary	ovary
7	chr3:109882400-109884000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr3:109882400-109884000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr3:109882600-109883400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:109882800-109884000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:109882800-109884000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr3:109882800-109884400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:109883200-109885400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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