Variant report

Variant	rs4682174
Chromosome Location	chr3:109884581-109884582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1015582	0.98[ASN][1000 genomes]
rs10934015	0.90[ASN][1000 genomes]
rs13066598	0.90[ASN][1000 genomes]
rs1350856	0.93[ASN][1000 genomes]
rs1356632	0.86[ASN][1000 genomes]
rs16856504	0.82[ASN][1000 genomes]
rs1914855	0.90[ASN][1000 genomes]
rs1993755	0.93[ASN][1000 genomes]
rs2126285	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2169401	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4393940	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4469005	0.90[ASN][1000 genomes]
rs55712280	0.93[ASN][1000 genomes]
rs55801320	0.93[ASN][1000 genomes]
rs56069641	0.93[ASN][1000 genomes]
rs58958221	0.93[ASN][1000 genomes]
rs6414243	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6437893	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6788747	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67915407	0.82[ASN][1000 genomes]
rs6795543	0.88[ASN][1000 genomes]
rs73213503	0.93[ASN][1000 genomes]
rs73213506	0.93[ASN][1000 genomes]
rs73213508	0.93[ASN][1000 genomes]
rs73215548	0.82[ASN][1000 genomes]
rs7434250	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9814013	0.90[ASN][1000 genomes]
rs9849346	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829667	chr3:109786662-109939671	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
3	nsv432472	chr3:109871824-109942107	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv432473	chr3:109875668-109918190	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv2754324	chr3:109875668-109933826	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv460816	chr3:109878008-110044601	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv591271	chr3:109878008-110044601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109883200-109885400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:109883600-109884600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr3:109883600-109884800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
4	chr3:109883800-109884800	Enhancers	Fetal Lung	lung
5	chr3:109883800-109886200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:109884000-109884600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:109884000-109884600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr3:109884000-109884600	Flanking Active TSS	A549	lung
9	chr3:109884000-109884800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr3:109884000-109885000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr3:109884000-109885000	Enhancers	Stomach Mucosa	stomach
12	chr3:109884200-109884800	Active TSS	Liver	Liver
13	chr3:109884200-109885000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:109884200-109885000	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr3:109884200-109885000	Enhancers	NHLF	lung
16	chr3:109884200-109886000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:109884400-109884600	Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr3:109884400-109884800	Enhancers	H9 Cell Line	embryonic stem cell
19	chr3:109884400-109884800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:109884400-109884800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:109884400-109884800	Active TSS	Adipose Nuclei	Adipose
22	chr3:109884400-109884800	Active TSS	Aorta	Aorta
23	chr3:109884400-109884800	Active TSS	Fetal Stomach	stomach
24	chr3:109884400-109885000	Active TSS	ES-I3 Cell Line	embryonic stem cell
25	chr3:109884400-109885000	Enhancers	Ovary	ovary
26	chr3:109884400-109885400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr3:109884400-109886000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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