Variant report
| Variant | rs13078915 |
|---|---|
| Chromosome Location | chr3:109857340-109857341 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10934012 | 0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10934015 | 0.93[EUR][1000 genomes] |
| rs10934022 | 0.81[EUR][1000 genomes] |
| rs11916299 | 0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12233453 | 0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13066598 | 0.94[EUR][1000 genomes] |
| rs13069465 | 0.81[AFR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1356632 | 0.86[EUR][1000 genomes] |
| rs1461752 | 0.80[EUR][1000 genomes] |
| rs1568315 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1914855 | 0.89[EUR][1000 genomes] |
| rs4324487 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4469005 | 0.89[EUR][1000 genomes] |
| rs59529766 | 0.81[EUR][1000 genomes] |
| rs6795543 | 0.92[EUR][1000 genomes] |
| rs7616528 | 0.86[EUR][1000 genomes] |
| rs7623564 | 0.80[EUR][1000 genomes] |
| rs7642520 | 0.86[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7648707 | 0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs964619 | 0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9814013 | 0.93[EUR][1000 genomes] |
| rs9849346 | 0.89[EUR][1000 genomes] |
| rs9876423 | 0.80[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877332 | chr3:109575764-110186611 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv829667 | chr3:109786662-109939671 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | n/a | n/a | inside rSNPs | diseases |
| 3 | nsv1003617 | chr3:109822033-109865265 | Enhancers Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| 4 | nsv3940 | chr3:109825950-109870342 | Weak transcription Enhancers ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:109854200-109859000 | Weak transcription | Aorta | Aorta |
