Variant report
| Variant | rs2085918 |
|---|---|
| Chromosome Location | chr3:109909938-109909939 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10934015 | 0.81[EUR][1000 genomes] |
| rs10934022 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12233453 | 0.86[EUR][1000 genomes] |
| rs13066598 | 0.83[EUR][1000 genomes] |
| rs1461746 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1461752 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1551797 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1903580 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1903581 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1993754 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56287426 | 0.97[ASN][1000 genomes] |
| rs59529766 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6769312 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6793709 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6795543 | 0.81[EUR][1000 genomes] |
| rs7623564 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7648707 | 0.81[EUR][1000 genomes] |
| rs7651846 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs964619 | 0.86[EUR][1000 genomes] |
| rs9814013 | 0.81[EUR][1000 genomes] |
| rs9876423 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877332 | chr3:109575764-110186611 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv829667 | chr3:109786662-109939671 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | n/a | n/a | inside rSNPs | diseases |
| 3 | nsv432472 | chr3:109871824-109942107 | Weak transcription Enhancers Flanking Active TSS Active TSS | n/a | n/a | inside rSNPs | diseases |
| 4 | nsv432473 | chr3:109875668-109918190 | Enhancers Flanking Active TSS Weak transcription Active TSS | n/a | n/a | inside rSNPs | diseases |
| 5 | esv2754324 | chr3:109875668-109933826 | Weak transcription Enhancers Flanking Active TSS Active TSS | n/a | n/a | inside rSNPs | diseases |
| 6 | nsv460816 | chr3:109878008-110044601 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | nsv591271 | chr3:109878008-110044601 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 8 | esv2752610 | chr3:109906409-109918190 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 9 | nsv432475 | chr3:109906409-109918190 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:109908400-109912000 | Weak transcription | Placenta Amnion | Placenta Amnion |
