Variant report

Variant	rs1908223
Chromosome Location	chr8:119880307-119880308
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119873937..119876424-chr8:119878848..119881017,4	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10105072	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11775992	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3103983	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3103984	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3103993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134053	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3134055	0.83[EUR][1000 genomes]
rs3134090	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3134091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3134096	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3134097	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3890832	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3922789	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4242588	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4242589	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4242590	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4242591	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4339675	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4355804	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4372031	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4512405	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4512406	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4532625	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56097036	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6469774	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6469777	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6469778	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6469779	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7007555	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7827202	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv470234	chr8:119856209-119906530	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv517081	chr8:119872439-119886889	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119874400-119880400	Weak transcription	Aorta	Aorta
2	chr8:119875200-119880400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr8:119876400-119880800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr8:119877400-119883400	Enhancers	Fetal Intestine Large	intestine
5	chr8:119877600-119880400	Enhancers	Fetal Kidney	kidney
6	chr8:119877600-119880600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:119877600-119881400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:119877600-119883600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr8:119878000-119880400	Enhancers	Fetal Lung	lung
10	chr8:119878000-119883200	Enhancers	Fetal Intestine Small	intestine
11	chr8:119878800-119880400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr8:119878800-119880400	Weak transcription	GM12878-XiMat	blood
13	chr8:119879000-119880800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr8:119879000-119889800	Weak transcription	Pancreas	Pancrea
15	chr8:119879200-119880400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:119879200-119880600	Enhancers	Liver	Liver
17	chr8:119879200-119880800	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr8:119879200-119880800	Weak transcription	NHDF-Ad	bronchial
19	chr8:119879200-119889600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr8:119879400-119885200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr8:119879400-119890000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr8:119880000-119880400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr8:119880000-119880400	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr8:119880000-119880600	Enhancers	H1 Cell Line	embryonic stem cell
25	chr8:119880000-119880600	Enhancers	H9 Cell Line	embryonic stem cell
26	chr8:119880000-119880800	Enhancers	Duodenum Mucosa	Duodenum
27	chr8:119880200-119880600	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr8:119880200-119880600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr8:119880200-119880600	Enhancers	Sigmoid Colon	Sigmoid Colon

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