Variant report

Variant	rs10105072
Chromosome Location	chr8:119907456-119907457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10808502	0.85[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs11775992	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1908223	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3103983	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3103984	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3103993	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134053	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3134055	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3134090	0.82[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3134091	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3134096	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3134097	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3890832	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3922789	0.80[ASN][1000 genomes]
rs4242588	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4242589	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4242590	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4242591	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4339675	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4355804	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4372031	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4512405	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4512406	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4532625	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56097036	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6469774	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6469776	0.81[ASN][1000 genomes]
rs6469777	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6469778	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6469779	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6469780	0.83[ASN][1000 genomes]
rs6985025	0.81[ASN][1000 genomes]
rs7007555	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7827202	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv891415	chr8:119886923-119921354	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119903800-119908200	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links