Variant report

Variant	rs3890832
Chromosome Location	chr8:119892216-119892217
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119872555..119876115-chr8:119889180..119893027,6	MCF-7	breast:
2	chr8:119890957..119892807-chr8:119894460..119897666,3	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10105072	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10808502	0.82[ASN][1000 genomes]
rs11775992	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1908223	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3103983	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3103984	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3103993	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3134053	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3134055	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3134062	0.82[MEX][hapmap]
rs3134090	0.82[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3134091	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3134096	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3134097	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3922789	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4242588	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4242589	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4242590	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4242591	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4339675	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4355804	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4372031	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4512405	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4512406	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4532625	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56097036	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6469774	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6469777	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6469778	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6469779	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6469780	0.82[ASN][1000 genomes]
rs7007555	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7827202	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv470234	chr8:119856209-119906530	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv891415	chr8:119886923-119921354	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119889000-119895200	Enhancers	Hela-S3	cervix
2	chr8:119889600-119892400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:119889600-119895000	Enhancers	NHDF-Ad	bronchial
4	chr8:119889600-119895200	Enhancers	NHLF	lung
5	chr8:119889800-119893200	Weak transcription	Aorta	Aorta
6	chr8:119890000-119892400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:119890400-119892600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr8:119890600-119892600	Weak transcription	Fetal Intestine Small	intestine
9	chr8:119891000-119893600	Weak transcription	A549	lung
10	chr8:119891000-119893800	Weak transcription	NHEK	skin
11	chr8:119891200-119892800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:119891400-119893000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr8:119891600-119893400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:119891600-119894200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:119891800-119893000	Weak transcription	Osteobl	bone
16	chr8:119891800-119893200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr8:119891800-119893400	Weak transcription	NH-A	brain
18	chr8:119892000-119892600	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links