Variant report

Variant	rs1913488
Chromosome Location	chr4:99374430-99374431
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99368820..99371256-chr4:99372389..99374542,2	K562	blood:

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10001086	0.83[EUR][1000 genomes]
rs10001453	0.83[EUR][1000 genomes]
rs10003618	0.81[EUR][1000 genomes]
rs10005811	0.81[EUR][1000 genomes]
rs10014088	0.81[EUR][1000 genomes]
rs10017792	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10022966	0.81[EUR][1000 genomes]
rs10023500	0.81[EUR][1000 genomes]
rs10025306	0.83[EUR][1000 genomes]
rs10028275	0.81[EUR][1000 genomes]
rs10030765	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10032440	0.83[EUR][1000 genomes]
rs10516429	0.96[EUR][1000 genomes]
rs10516431	0.83[EUR][1000 genomes]
rs12499136	0.91[EUR][1000 genomes]
rs12499799	0.96[EUR][1000 genomes]
rs12500789	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12501972	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12501974	0.96[EUR][1000 genomes]
rs12502351	0.96[EUR][1000 genomes]
rs12503056	1.00[ASN][1000 genomes]
rs12505246	0.83[EUR][1000 genomes]
rs12507118	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12507425	0.91[EUR][1000 genomes]
rs12507859	0.96[EUR][1000 genomes]
rs12508322	0.86[ASN][1000 genomes]
rs12509417	0.96[EUR][1000 genomes]
rs12509834	0.83[EUR][1000 genomes]
rs12510095	0.96[EUR][1000 genomes]
rs12512920	0.83[EUR][1000 genomes]
rs13119703	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1399243	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1453345	0.96[EUR][1000 genomes]
rs1533328	0.81[EUR][1000 genomes]
rs17027454	0.96[EUR][1000 genomes]
rs17027530	0.91[EUR][1000 genomes]
rs17027532	0.91[EUR][1000 genomes]
rs17027533	0.91[EUR][1000 genomes]
rs17027545	0.91[EUR][1000 genomes]
rs17027549	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17027552	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17027585	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17027603	0.97[ASN][1000 genomes]
rs1913489	0.96[EUR][1000 genomes]
rs1913490	0.81[EUR][1000 genomes]
rs2063746	0.91[EUR][1000 genomes]
rs2090118	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28411105	0.83[EUR][1000 genomes]
rs28413645	0.96[EUR][1000 genomes]
rs28416087	1.00[ASN][1000 genomes]
rs28568441	0.97[ASN][1000 genomes]
rs28644420	0.81[EUR][1000 genomes]
rs28666485	0.81[EUR][1000 genomes]
rs28703816	0.81[EUR][1000 genomes]
rs28733733	0.97[ASN][1000 genomes]
rs28798461	0.97[ASN][1000 genomes]
rs35484325	0.81[EUR][1000 genomes]
rs3775537	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4282181	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4321644	0.81[EUR][1000 genomes]
rs4557264	0.81[EUR][1000 genomes]
rs4593139	0.96[EUR][1000 genomes]
rs4699338	0.81[EUR][1000 genomes]
rs4699341	0.96[EUR][1000 genomes]
rs4699623	0.94[EUR][1000 genomes]
rs4699625	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4699628	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4699629	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4699630	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4699632	0.83[EUR][1000 genomes]
rs4699633	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4699634	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56987276	0.96[EUR][1000 genomes]
rs61080824	0.83[EUR][1000 genomes]
rs6811171	0.83[EUR][1000 genomes]
rs6811725	0.81[EUR][1000 genomes]
rs6813960	0.81[EUR][1000 genomes]
rs6822914	0.81[EUR][1000 genomes]
rs6831497	0.96[EUR][1000 genomes]
rs6831730	0.96[EUR][1000 genomes]
rs6833596	0.81[EUR][1000 genomes]
rs6834829	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6835676	0.97[ASN][1000 genomes]
rs6845766	1.00[ASN][1000 genomes]
rs6846417	0.81[EUR][1000 genomes]
rs72896364	0.81[EUR][1000 genomes]
rs73832309	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7440164	0.96[EUR][1000 genomes]
rs7654379	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7655427	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7656017	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7664210	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7675605	0.97[ASN][1000 genomes]
rs7676285	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7694221	0.81[EUR][1000 genomes]
rs890207	0.92[EUR][1000 genomes]
rs919028	0.96[EUR][1000 genomes]
rs9790573	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529623	chr4:98501338-99460166	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	esv2763801	chr4:99094892-99413853	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv879651	chr4:99105055-99441349	Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99364000-99380800	Weak transcription	Brain Angular Gyrus	brain
2	chr4:99370600-99374800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:99373600-99377200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:99374000-99378000	Weak transcription	Aorta	Aorta

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