Variant report

Variant	rs28416087
Chromosome Location	chr4:99373431-99373432
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99368820..99371256-chr4:99372389..99374542,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10003618	0.81[AMR][1000 genomes]
rs10017792	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10022966	0.81[AMR][1000 genomes]
rs10025306	0.81[AMR][1000 genomes]
rs10030765	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12501972	1.00[ASN][1000 genomes]
rs12503056	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12505246	0.81[AMR][1000 genomes]
rs12508322	0.86[ASN][1000 genomes]
rs17027564	0.81[AMR][1000 genomes]
rs17027603	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1913488	1.00[ASN][1000 genomes]
rs2063745	0.81[AMR][1000 genomes]
rs2090118	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28568441	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28733733	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28798461	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34491917	0.81[AMR][1000 genomes]
rs4699632	0.81[AMR][1000 genomes]
rs6811725	0.81[AMR][1000 genomes]
rs6813960	0.81[AMR][1000 genomes]
rs6834829	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6835676	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6845766	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73832309	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7664210	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7673119	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7675605	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7676060	0.81[AMR][1000 genomes]
rs7676285	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529623	chr4:98501338-99460166	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	esv2763801	chr4:99094892-99413853	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv879651	chr4:99105055-99441349	Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99364000-99380800	Weak transcription	Brain Angular Gyrus	brain
2	chr4:99370400-99373600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:99370600-99374800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:99370800-99373800	Weak transcription	Fetal Heart	heart
5	chr4:99373200-99373600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:99373200-99373800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr4:99373200-99374000	Enhancers	Osteobl	bone
8	chr4:99373400-99373600	ZNF genes & repeats	Primary B cells from cord blood	blood
9	chr4:99373400-99373600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:99373400-99374000	ZNF genes & repeats	Aorta	Aorta

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