Variant report

Variant	rs6813960
Chromosome Location	chr4:99337561-99337562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 165 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:160)

rs_ID	r²[population]
rs10001086	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10001453	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10002767	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10003618	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10005811	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10006820	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10010135	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10012125	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10014034	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10014088	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10017792	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10022047	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10022966	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10023500	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10025306	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10028275	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10028373	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10029454	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10030765	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10032440	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10454790	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10470895	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10470952	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10516429	0.92[ASN][1000 genomes]
rs10516431	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12499009	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12499136	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12499799	0.92[ASN][1000 genomes]
rs12500789	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12502351	0.92[ASN][1000 genomes]
rs12503806	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12505246	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12507118	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12507425	0.92[ASN][1000 genomes]
rs12507859	0.92[ASN][1000 genomes]
rs12508445	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12509125	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12509417	0.92[ASN][1000 genomes]
rs12509834	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12510055	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12510095	0.92[ASN][1000 genomes]
rs12511262	0.92[ASN][1000 genomes]
rs12512117	0.87[EUR][1000 genomes]
rs12512920	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13119703	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13353584	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1399242	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1399243	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1453344	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1533328	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1580065	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1580066	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17027412	0.91[EUR][1000 genomes]
rs17027449	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17027452	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17027454	0.85[ASN][1000 genomes]
rs17027530	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17027532	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17027533	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17027543	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17027545	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17027549	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17027552	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17027564	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17027585	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1913488	0.81[EUR][1000 genomes]
rs1913489	0.92[ASN][1000 genomes]
rs1913490	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2042653	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2042654	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2063745	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2063746	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2081490	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2090118	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28367114	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28372185	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28411105	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28413645	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28416087	0.81[AMR][1000 genomes]
rs28536684	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28644420	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28656298	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28666485	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28667784	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28703816	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28715883	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28733733	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28798461	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28862004	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34491917	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35484325	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3775537	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3775538	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3822115	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4282181	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4321644	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4557264	0.89[EUR][1000 genomes]
rs4593139	0.92[ASN][1000 genomes]
rs4699338	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4699341	0.92[ASN][1000 genomes]
rs4699342	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699622	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4699623	0.92[ASN][1000 genomes]
rs4699625	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699626	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699627	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4699628	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699629	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699630	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4699631	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4699632	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4699633	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699634	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56376105	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56987276	0.89[ASN][1000 genomes]
rs58118567	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60613860	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61080824	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532732	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6811171	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6811725	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6822914	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6828936	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6831497	0.92[ASN][1000 genomes]
rs6831730	0.92[ASN][1000 genomes]
rs6833504	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6833596	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6834829	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6835411	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6835676	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6843874	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6846417	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72688435	0.92[ASN][1000 genomes]
rs72894301	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72896317	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72896364	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7440164	0.92[ASN][1000 genomes]
rs7654379	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7654497	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7655147	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7655427	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7656017	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7664210	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7673119	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676060	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7676285	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7678942	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7683964	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7687685	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7692963	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7694221	0.92[ASN][1000 genomes]
rs7695463	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs919027	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9790573	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9990962	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9991874	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9992518	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9996568	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9997665	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9997666	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529623	chr4:98501338-99460166	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	esv2763801	chr4:99094892-99413853	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv879651	chr4:99105055-99441349	Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99264200-99338200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr4:99285000-99337800	Weak transcription	HUVEC	blood vessel
3	chr4:99288400-99342400	Weak transcription	A549	lung
4	chr4:99290600-99337800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr4:99290600-99346000	Weak transcription	Fetal Lung	lung
6	chr4:99299400-99350800	Weak transcription	NHLF	lung
7	chr4:99299600-99338200	Weak transcription	NHDF-Ad	bronchial
8	chr4:99307000-99366200	Weak transcription	Fetal Brain Male	brain
9	chr4:99308600-99363200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr4:99308800-99337800	Weak transcription	Osteobl	bone
11	chr4:99312000-99355400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr4:99315800-99337800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:99317600-99342200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:99317800-99342800	Weak transcription	HSMMtube	muscle
15	chr4:99319200-99341800	Weak transcription	HMEC	breast
16	chr4:99325800-99367000	Weak transcription	Right Ventricle	heart
17	chr4:99326400-99342200	Weak transcription	Brain Angular Gyrus	brain
18	chr4:99327800-99355400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr4:99330800-99337800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr4:99330800-99342200	Weak transcription	Brain Substantia Nigra	brain
21	chr4:99331000-99337800	Weak transcription	NH-A	brain
22	chr4:99331000-99338000	Weak transcription	HSMM	muscle
23	chr4:99333400-99342200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr4:99333800-99342200	Weak transcription	Brain Anterior Caudate	brain
25	chr4:99334000-99338000	Weak transcription	Liver	Liver
26	chr4:99334000-99339000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr4:99334000-99339800	Weak transcription	Fetal Stomach	stomach
28	chr4:99334000-99342200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr4:99334000-99355000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr4:99334200-99338000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr4:99334200-99338000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:99334200-99338000	Weak transcription	Primary T cells from cord blood	blood
33	chr4:99334200-99338400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr4:99334200-99338800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr4:99334200-99339200	Weak transcription	Colon Smooth Muscle	Colon
36	chr4:99334200-99339800	Weak transcription	Ovary	ovary
37	chr4:99334200-99339800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr4:99334200-99340000	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr4:99334200-99342000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr4:99334200-99342000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr4:99334200-99342200	Weak transcription	Brain Hippocampus Middle	brain
42	chr4:99334200-99342200	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr4:99334200-99342400	Weak transcription	Pancreas	Pancrea
44	chr4:99334200-99342400	Weak transcription	GM12878-XiMat	blood
45	chr4:99334200-99345000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr4:99334200-99350800	Weak transcription	NHEK	skin
47	chr4:99334200-99355200	Weak transcription	Fetal Kidney	kidney
48	chr4:99334200-99355800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr4:99334400-99337800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr4:99334400-99337800	Weak transcription	Primary B cells from cord blood	blood

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