Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10258261	0.85[EUR][1000 genomes]
rs10262687	0.85[EUR][1000 genomes]
rs11496160	0.86[EUR][1000 genomes]
rs11496161	0.86[EUR][1000 genomes]
rs11514887	0.86[EUR][1000 genomes]
rs11770045	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11972367	0.91[EUR][1000 genomes]
rs11975826	0.91[EUR][1000 genomes]
rs11977373	0.91[EUR][1000 genomes]
rs1357795	0.91[EUR][1000 genomes]
rs1404412	0.91[ASN][1000 genomes]
rs1524762	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1608705	0.85[EUR][1000 genomes]
rs1880451	0.81[EUR][1000 genomes]
rs1917355	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1917360	0.91[EUR][1000 genomes]
rs1917365	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1917366	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2030722	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2049437	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2091217	0.86[EUR][1000 genomes]
rs2091218	0.86[EUR][1000 genomes]
rs2402737	0.85[EUR][1000 genomes]
rs28710176	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28729091	0.92[EUR][1000 genomes]
rs28830928	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2896356	0.92[EUR][1000 genomes]
rs56134204	0.84[AMR][1000 genomes]
rs6972148	0.91[EUR][1000 genomes]
rs73221450	0.91[EUR][1000 genomes]
rs73221460	0.91[EUR][1000 genomes]
rs73221461	0.91[EUR][1000 genomes]
rs884805	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv831118	chr7:124172267-124347527	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3331383	chr7:124249050-124281444	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124271400-124287600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:124274400-124285800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:124276800-124280400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr7:124277000-124280400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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