Variant report
| Variant | rs28830928 |
|---|---|
| Chromosome Location | chr7:124274001-124274002 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11770045 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11972367 | 0.83[EUR][1000 genomes] |
| rs11975826 | 0.84[EUR][1000 genomes] |
| rs11977373 | 0.83[EUR][1000 genomes] |
| rs1357795 | 0.83[EUR][1000 genomes] |
| rs1404412 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1524762 | 0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1917355 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1917360 | 0.83[EUR][1000 genomes] |
| rs1917363 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1917365 | 0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1917366 | 0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2030722 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2049437 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28710176 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs28729091 | 0.84[EUR][1000 genomes] |
| rs2896356 | 0.84[EUR][1000 genomes] |
| rs56134204 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6972148 | 0.83[EUR][1000 genomes] |
| rs73221450 | 0.83[EUR][1000 genomes] |
| rs73221460 | 0.83[EUR][1000 genomes] |
| rs73221461 | 0.83[EUR][1000 genomes] |
| rs884805 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv429809 | chr7:123937674-124835925 | Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 49 gene(s) | inside rSNPs | diseases |
| 2 | nsv831118 | chr7:124172267-124347527 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv3330349 | chr7:124249050-124277678 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv3331383 | chr7:124249050-124281444 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:124271400-124287600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
