Variant report

Variant	rs28710176
Chromosome Location	chr7:124281698-124281699
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10258261	0.85[EUR][1000 genomes]
rs10262687	0.85[EUR][1000 genomes]
rs11496160	0.86[EUR][1000 genomes]
rs11496161	0.86[EUR][1000 genomes]
rs11514887	0.86[EUR][1000 genomes]
rs11770045	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11972367	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11975826	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11977373	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1357795	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1404412	0.87[ASN][1000 genomes]
rs1524762	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1608705	0.85[EUR][1000 genomes]
rs1917355	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1917360	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1917363	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1917365	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1917366	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030722	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2049437	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2091217	0.86[EUR][1000 genomes]
rs2091218	0.86[EUR][1000 genomes]
rs2402737	0.85[EUR][1000 genomes]
rs28729091	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28830928	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2896356	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56134204	0.83[AMR][1000 genomes]
rs6972148	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73221450	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73221460	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73221461	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs884805	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv831118	chr7:124172267-124347527	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124271400-124287600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:124274400-124285800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:124280400-124285600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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