Variant report

Variant	rs1922649
Chromosome Location	chr4:160463892-160463893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13114272	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13117819	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13145068	0.86[EUR][1000 genomes]
rs1882618	0.87[AMR][1000 genomes]
rs1922647	0.87[AMR][1000 genomes]
rs1922648	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2244167	0.87[AMR][1000 genomes]
rs2707704	0.87[AMR][1000 genomes]
rs2851775	0.87[AMR][1000 genomes]
rs2851776	0.87[AMR][1000 genomes]
rs2851783	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2851784	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2851785	0.87[AMR][1000 genomes]
rs2851790	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2851793	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34775142	0.86[EUR][1000 genomes]
rs4602451	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160459000-160468800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160459400-160465200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr4:160460200-160468800	Weak transcription	HSMM	muscle
4	chr4:160463000-160464000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:160463600-160464200	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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